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Re: [scipion-users] scipion3 workflow and cryosparc plugin problem
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From: Dmitry S. <Sem...@gm...> - 2021-02-23 10:34:51
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Dear Pablo, On the initial step — $ scipion update (in our case scipion3 update) I have this image How can I get the 3.0.10? Thank you Sincerely, Dmitry > On 23. Feb 2021, at 11:03, Pablo Conesa <pc...@cn...> wrote: > > Dear all! > > We have fixed this in scipion-pyworkflow package (this is not a plugin but a pip pacakge updatable through scipipn3 update). So to proceed run: > > scipion3 update > > You should see something like this-->The package scipion-pyworkflow is out of date. Your version is 3.0.9, the latest is 3.0.10. > > > > NOTE: It should install scipion-pyworkflow 3.0.10, informing clearly now which protocols are new or in beta: > > The version checking is cached so if it checked it recently is will not work. To remove the cached files type: > > rm /tmp/outdated_cache_scipion-* > > and then scipion3 update. > > NOTE2: What it brings you is a way to identify the development status of the protocolos: > > <icefhmmbcpapfdio.png> > > > > > > On 23/2/21 9:03, Pablo Conesa wrote: >> Hi, Wolfgang....rest, do not update cryosparc plugin yet. We released a buggy version easy to solve. >> >> In the next hour we'll probably fix this. I'll send an email when ready. >> >> Apologies! >> >> On 22/2/21 13:01, Lugmayr, Wolfgang wrote: >>> hi, >>> >>> i tried to combine scipion and cryosparc today on a local workstation and run into the error message below. >>> >>> $ scipion3 last >>> Scipion v3.0.7 - Eugenius >>> > error when importing from cryosparc2.protocols: cannot import name 'BETA' from 'pyworkflow' (/cssbsw/em/scipion/3.0/anaconda3/envs/.scipion3env/lib/python3.8/site-packages/pyworkflow/__init__.py) >>> File "/cssbsw/em/scipion/3.0/anaconda3/envs/.scipion3env/lib/python3.8/site-packages/cryosparc2/protocols/protocol_cryosparc_global_ctf_refinement.py", line 33, in <module> >>> Check the plugin manager (Configuration->Plugins in Scipion manager window) >>> or use 'scipion installp --help --checkUpdates' in the command line to check for upgrades, >>> it could be a versions compatibility issue. >>> >>> $ scipion3 update >>> Scipion v3.0.7 - Eugenius >>> The package scipion-pyworkflow is up to date. Your version is 3.0.9 >>> The package scipion-em is up to date. Your version is 3.0.7 >>> The package scipion-app is up to date. Your version is 3.0.7 >>> >>> i assume this has something to do with the recently updated workflow package and not with my yet not configured cryosparc configuration, right? >>> >>> cheers, >>> wolfgang >>> >> -- >> Pablo Conesa - Madrid Scipion <http://scipion.i2pc.es/> team >> >> >> >> _______________________________________________ >> scipion-users mailing list >> sci...@li... <mailto:sci...@li...> >> https://lists.sourceforge.net/lists/listinfo/scipion-users <https://lists.sourceforge.net/lists/listinfo/scipion-users> > -- > Pablo Conesa - Madrid Scipion <http://scipion.i2pc.es/> team > _______________________________________________ > scipion-users mailing list > sci...@li... > https://lists.sourceforge.net/lists/listinfo/scipion-users |
