Re: [scipion-users] scipion3 workflow and cryosparc plugin problem

[Jose M. de la R. T. <del...@gm...>]

Dear Pablo,

There are many Relion protocols that are shown as "new" in your screenshot
and they have been there for a while.

Best,
Jose Miguel



On Tue, Feb 23, 2021 at 11:03 AM Pablo Conesa <pc...@cn...> wrote:

> Dear all!
>
> We have fixed this in scipion-pyworkflow package (this is not a plugin but
> a pip pacakge updatable through scipipn3 update). So to proceed run:
>
> scipion3 update
>
> You should see something like this-->The package scipion-pyworkflow is out
> of date. Your version is 3.0.9, the latest is 3.0.10.
>
>
> NOTE: It should install scipion-pyworkflow 3.0.10, informing clearly now
> which protocols are new or in beta:
>
> The version checking  is cached so if it checked it recently is will not
> work. To remove the cached files type:
>
> rm /tmp/outdated_cache_scipion-*
>
> and then scipion3 update.
>
> NOTE2: What it brings you is a way to identify the development status of
> the protocolos:
>
>
>
> On 23/2/21 9:03, Pablo Conesa wrote:
>
> Hi, Wolfgang....rest, do not update cryosparc plugin yet. We released a
> buggy version easy to solve.
>
> In the next hour we'll probably fix this. I'll send an email when ready.
>
> Apologies!
> On 22/2/21 13:01, Lugmayr, Wolfgang wrote:
>
> hi,
>
> i tried to combine scipion and cryosparc today on a local workstation and run into the error message below.
>
> $ scipion3 last
> Scipion v3.0.7 - Eugenius
>  > error when importing from cryosparc2.protocols: cannot import name 'BETA' from 'pyworkflow' (/cssbsw/em/scipion/3.0/anaconda3/envs/.scipion3env/lib/python3.8/site-packages/pyworkflow/__init__.py)
>    File "/cssbsw/em/scipion/3.0/anaconda3/envs/.scipion3env/lib/python3.8/site-packages/cryosparc2/protocols/protocol_cryosparc_global_ctf_refinement.py", line 33, in <module>
>    Check the plugin manager (Configuration->Plugins in Scipion manager window)
>    or use 'scipion installp --help --checkUpdates' in the command line to check for upgrades,
>    it could be a versions compatibility issue.
>
> $ scipion3 update
> Scipion v3.0.7 - Eugenius
> The package scipion-pyworkflow is up to date.  Your version is 3.0.9
> The package scipion-em is up to date.  Your version is 3.0.7
> The package scipion-app is up to date.  Your version is 3.0.7
>
> i assume this has something to do with the recently updated workflow package and not with my yet not configured cryosparc configuration, right?
>
> cheers,
> wolfgang
>
>
> --
> Pablo Conesa - *Madrid Scipion <http://scipion.i2pc.es> team*
>
>
> _______________________________________________
> scipion-users mailing lis...@li...https://lists.sourceforge.net/lists/listinfo/scipion-users
>
> --
> Pablo Conesa - *Madrid Scipion <http://scipion.i2pc.es> team*
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