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Re: [scipion-users] scipion3 workflow and cryosparc plugin problem
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From: Pablo C. <pc...@cn...> - 2021-02-23 10:03:23
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Dear all! We have fixed this in scipion-pyworkflow package (this is not a plugin but a pip pacakge updatable through scipipn3 update). So to proceed run: scipion3 update You should see something like this-->The package scipion-pyworkflow is out of date. Your version is 3.0.9, the latest is 3.0.10. NOTE: It should install scipion-pyworkflow 3.0.10, informing clearly now which protocols are new or in beta: The version checking is cached so if it checked it recently is will not work. To remove the cached files type: rm /tmp/outdated_cache_scipion-* and then scipion3 update. NOTE2: What it brings you is a way to identify the development status of the protocolos: On 23/2/21 9:03, Pablo Conesa wrote: > > Hi, Wolfgang....rest, do not update cryosparc plugin yet. We released > a buggy version easy to solve. > > In the next hour we'll probably fix this. I'll send an email when ready. > > Apologies! > > On 22/2/21 13:01, Lugmayr, Wolfgang wrote: >> hi, >> >> i tried to combine scipion and cryosparc today on a local workstation and run into the error message below. >> >> $ scipion3 last >> Scipion v3.0.7 - Eugenius >> > error when importing from cryosparc2.protocols: cannot import name 'BETA' from 'pyworkflow' (/cssbsw/em/scipion/3.0/anaconda3/envs/.scipion3env/lib/python3.8/site-packages/pyworkflow/__init__.py) >> File "/cssbsw/em/scipion/3.0/anaconda3/envs/.scipion3env/lib/python3.8/site-packages/cryosparc2/protocols/protocol_cryosparc_global_ctf_refinement.py", line 33, in <module> >> Check the plugin manager (Configuration->Plugins in Scipion manager window) >> or use 'scipion installp --help --checkUpdates' in the command line to check for upgrades, >> it could be a versions compatibility issue. >> >> $ scipion3 update >> Scipion v3.0.7 - Eugenius >> The package scipion-pyworkflow is up to date. Your version is 3.0.9 >> The package scipion-em is up to date. Your version is 3.0.7 >> The package scipion-app is up to date. Your version is 3.0.7 >> >> i assume this has something to do with the recently updated workflow package and not with my yet not configured cryosparc configuration, right? >> >> cheers, >> wolfgang >> > -- > Pablo Conesa - *Madrid Scipion <http://scipion.i2pc.es> team* > > > _______________________________________________ > scipion-users mailing list > sci...@li... > https://lists.sourceforge.net/lists/listinfo/scipion-users -- Pablo Conesa - *Madrid Scipion <http://scipion.i2pc.es> team* |
