Re: [scipion-users] make externally compiled HDF5 available for xmipp compile

[Hoover, D. (NIH/C. [E] <hoo...@hp...>]

One more question: what version of HDF5 does xmipp require?

David

On 2/19/2021 2:26 AM, Pablo Conesa wrote:
> Thanks Jason.
> 
> There is a detailed "custom xmipp installation" page <https://github.com/I2PC/xmipp/wiki/Xmipp-configuration-(version-20.07)> where you can adapt xmipp to your system, providing default installation does not work.
> 
> 
> On 19/2/21 1:13, Jason Key wrote:
>> Hi David,
>>
>> On Thu, Feb 18, 2021 at 12:42 PM Hoover, David (NIH/CIT) [E] via
>> scipion-users<sci...@li...>  wrote:
>>> Is there any way of making HDF5 headers and libraries available for compiling xmipp?
>>> That is, must I install HDF5 with yum or apt-get into /usr/lib and /usr/include, or is there an environment variable or configuration setting that can be set to force the compile to look elsewhere for the header and library files?
>> I was able to do this by adding INCDIRFLAGS and LIBDIRFLAGS variables
>> to the xmipp.conf file in "software/em/xmippSrc-v3.20.07".
>>
>> Best,
>> Jason
>>
> -- 
> Pablo Conesa - *Madrid Scipion <http://scipion.i2pc.es> team*
> 
> 
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-- 
David Hoover, Ph.D.
Computational Biologist
High Performance Computing Services,
Center for Information Technology,
National Institutes of Health
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