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[scipion-users] cryoSPARC -- Local refinement error
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From: Dmitry A. S. <sem...@gm...> - 2021-02-16 20:25:18
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<html xmlns:o="urn:schemas-microsoft-com:office:office" xmlns:w="urn:schemas-microsoft-com:office:word" xmlns:m="http://schemas.microsoft.com/office/2004/12/omml" xmlns="http://www.w3.org/TR/REC-html40"><head><meta http-equiv=Content-Type content="text/html; charset=utf-8"><meta name=Generator content="Microsoft Word 15 (filtered medium)"><style><!-- /* Font Definitions */ @font-face {font-family:"Cambria Math"; panose-1:2 4 5 3 5 4 6 3 2 4;} @font-face {font-family:Calibri; panose-1:2 15 5 2 2 2 4 3 2 4;} /* Style Definitions */ p.MsoNormal, li.MsoNormal, div.MsoNormal {margin:0in; font-size:11.0pt; font-family:"Calibri",sans-serif;} .MsoChpDefault {mso-style-type:export-only;} @page WordSection1 {size:8.5in 11.0in; margin:1.0in 1.0in 1.0in 1.0in;} div.WordSection1 {page:WordSection1;} --></style></head><body lang=EN-US link=blue vlink="#954F72" style='word-wrap:break-word'><div class=WordSection1><div><p class=MsoNormal>Dear Yunior and all,</p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>I want to run the <b>Local refinement New</b> in cryoSPARC as a continuation of the SCIPION analysis.</p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>When I try to do that I got the following error:</p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal><span style='color:red'>[CPU: 6.57 GB] Traceback (most recent call last):<o:p></o:p></span></p><p class=MsoNormal><span style='color:red'> File "cryosparc_worker/cryosparc_compute/run.py", line 84, in cryosparc_compute.run.main<o:p></o:p></span></p><p class=MsoNormal><span style='color:red'> File "cryosparc_worker/cryosparc_compute/jobs/local_refine/newrun.py", line 116, in cryosparc_compute.jobs.local_refine.newrun.run_local_refine<o:p></o:p></span></p><p class=MsoNormal><span style='color:red'> File "/home/panos/software/cryosparc/cryosparc2_worker/cryosparc_compute/particles.py", line 77, in read_blobs with open(abs_path, 'rb') as mrc_file: FileNotFoundError: [Errno 2] No such file or directory: '/home/panos/software/cryosparc/scipion_projects/20200823_ApoF_ph9-panos/P9/J63/imported/mic_000001.mrcs'<o:p></o:p></span></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>Could you please prompt how to tackle this issue?</p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>I worry that the file required was temporarily created by SCIPION and can not be traced back. </p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>Thank you!</p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>Sincerely,</p></div><p class=MsoNormal>Dmitry</p><p class=MsoNormal><o:p> </o:p></p></div></body></html> |
