Re: [scipion-users] Out of memory with "Show classification in Scipion"

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<div dir='auto'>Nice Juha.&nbsp; Default value is 2GB...should we increase the default value?<div dir="auto"><br></div><div dir="auto">Will at least 4GB be better?</div></div><div class="gmail_extra"><br><div class="gmail_quote">El 24 ene. 2021 12:13, &quot;Huiskonen, Juha T&quot; &lt;juh...@he...&gt; escribió:<br type="attribution" /><blockquote class="quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word">
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<p>Found the answer:</p>
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<p>I added <span style="font-size:10.5pt;font-family:&#39;arial&#39; , sans-serif;color:#4d5156;background:white">JAVA_MAX_MEMORY &#61;
</span><span style="font-size:10.5pt;font-family:&#39;arial&#39; , sans-serif;color:#4d5156;background:white">15 in my scipion.conf
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<p>And now it works. </p>
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<p><b><span style="font-size:12pt;color:black">From: </span></b><span style="font-size:12pt;color:black">&#34;Huiskonen, Juha T&#34; &lt;juha.huiskonen&#64;helsinki.fi&gt;<br />
<b>Date: </b>Sunday 24. January 2021 at 11.23<br />
<b>To: </b>&#34;scipion-users&#64;lists.sourceforge.net&#34; &lt;scipion-users&#64;lists.sourceforge.net&gt;<br />
<b>Subject: </b>Out of memory with &#34;Show classification in Scipion&#34;</span><span style="font-size:12pt;color:black"></span></p>
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<p>Hi all,</p>
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<p>I have classified 3.8M particles to 4 classes.  Next I would like to create a new SetOfParticles with particles from 2 classes.  Normally I do this by clicking “Analyse Results”, &#34;Show classification in Scipion&#34; and saving
 particles from manually selected classes.  In the current case, I run out of memory (the maximum for interactive jobs is 15 Gb on the HPC cluster I am using) when I click  “Show classification in Scipion”.</p>
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<p>Is there any other way making a subset of particles after 3D classification than to visualize the classes?</p>
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<p>Best wishes,</p>
<p>Juha </p>
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