Re: [scipion-users] Out of memory with "Show classification in Scipion"

[Huiskonen, J. T <juh...@he...>]

Found the answer:

I added JAVA_MAX_MEMORY = 15 in my scipion.conf

And now it works.

From: "Huiskonen, Juha T" <juh...@he...>
Date: Sunday 24. January 2021 at 11.23
To: "sci...@li..." <sci...@li...>
Subject: Out of memory with "Show classification in Scipion"

Hi all,

I have classified 3.8M particles to 4 classes.  Next I would like to create a new SetOfParticles with particles from 2 classes.  Normally I do this by clicking “Analyse Results”, "Show classification in Scipion" and saving particles from manually selected classes.  In the current case, I run out of memory (the maximum for interactive jobs is 15 Gb on the HPC cluster I am using) when I click  “Show classification in Scipion”.

Is there any other way making a subset of particles after 3D classification than to visualize the classes?

Best wishes,
Juha