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Re: [scipion-users] Import relion particles error
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From: Moustafa, I. M. <ri...@ps...> - 2020-12-25 17:06:05
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Thank you Grigory for the fix. It works now! Ibrahim ________________________________ From: Grigory Sharov <sha...@gm...> Sent: Friday, December 25, 2020 8:10 AM To: Mailing list for Scipion users <sci...@li...> Subject: Re: [scipion-users] Import relion particles error Hi, I have reproduced the problem and just released a hotfix. To update, run scipion3 installp -p scipion-em-relion --noBin This will install the 3.0.0b8 plugin with the fix for you. Thanks a lot for reporting this issue! Best regards, Grigory -------------------------------------------------------------------------------- Grigory Sharov, Ph.D. MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge Biomedical Campus, Cambridge CB2 0QH, UK. tel. +44 (0) 1223 267228<tel:+44%201223%20267228> e-mail: gs...@mr...<mailto:gs...@mr...> On Fri, Dec 25, 2020 at 5:31 AM Moustafa, Ibrahim M. <ri...@ps...<mailto:ri...@ps...>> wrote: Hello Grigory, 1) The plugin used is scipion-em-relion 3.0.0b2 2) Yes, particles imported from a _data.star file 3) Attached is a truncated version of run_data.star file with the first 100 lines Thanks for help. Ibrahim ________________________________ From: Grigory Sharov <sha...@gm...<mailto:sha...@gm...>> Sent: Thursday, December 24, 2020 5:58 AM To: Mailing list for Scipion users <sci...@li...<mailto:sci...@li...>> Subject: Re: [scipion-users] Import relion particles error Hello Ibrahim, could you please provide the following information so I could investigate further: 1) what relion plugin version do you use? (scipion3 installp -h) 2) do you import particles from a _data star file? 3) could you print here the first 100 lines of this star file? Thanks! Best regards, Grigory -------------------------------------------------------------------------------- Grigory Sharov, Ph.D. MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge Biomedical Campus, Cambridge CB2 0QH, UK. tel. +44 (0) 1223 267228<tel:+44%201223%20267228> e-mail: gs...@mr...<mailto:gs...@mr...> On Thu, Dec 24, 2020 at 7:45 AM Moustafa, Ibrahim M. <ri...@ps...<mailto:ri...@ps...>> wrote: Dear all, I am trying to import particles from relion.3.1.622 in Scipion v3.0.4 but I get the following error: Protocol failed: 'Row' object has no attribute 'rlnCtfMaxResolution' Not sure why convert31.py is not able to import the particles, insisting to read an attribute that does not exist in the star file. Any suggestion will be appreciated. Thank you, Ibrahim _______________________________________________ scipion-users mailing list sci...@li...<mailto:sci...@li...> https://lists.sourceforge.net/lists/listinfo/scipion-users<https://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Flists.sourceforge.net%2Flists%2Flistinfo%2Fscipion-users&data=04%7C01%7Cria2%40psu.edu%7C8dc626cb6e3141c5302d08d8a8d6916f%7C7cf48d453ddb4389a9c1c115526eb52e%7C0%7C0%7C637444986811347213%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=4BOb3%2BlvK6YxjwBwSC%2BQf8q5mYrXosWWCEr9QpmPXWc%3D&reserved=0> _______________________________________________ scipion-users mailing list sci...@li...<mailto:sci...@li...> https://lists.sourceforge.net/lists/listinfo/scipion-users<https://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Flists.sourceforge.net%2Flists%2Flistinfo%2Fscipion-users&data=04%7C01%7Cria2%40psu.edu%7C8dc626cb6e3141c5302d08d8a8d6916f%7C7cf48d453ddb4389a9c1c115526eb52e%7C0%7C0%7C637444986811347213%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=4BOb3%2BlvK6YxjwBwSC%2BQf8q5mYrXosWWCEr9QpmPXWc%3D&reserved=0> |
