Re: [scipion-users] Import relion particles error

[Grigory S. <sha...@gm...>]

Hi,

I have reproduced the problem and just released a hotfix. To update,
run *scipion3
installp -p scipion-em-relion --noBin*
This will install the 3.0.0b8 plugin with the fix for you.

Thanks a lot for reporting this issue!

Best regards,
Grigory

--------------------------------------------------------------------------------
Grigory Sharov, Ph.D.

MRC Laboratory of Molecular Biology,
Francis Crick Avenue,
Cambridge Biomedical Campus,
Cambridge CB2 0QH, UK.
tel. +44 (0) 1223 267228 <+44%201223%20267228>
e-mail: gs...@mr...


On Fri, Dec 25, 2020 at 5:31 AM Moustafa, Ibrahim M. <ri...@ps...> wrote:

> Hello Grigory,
>
>  1) The plugin used is scipion-em-relion 3.0.0b2
>
> 2) Yes, particles imported from a _data.star file
>
> 3) Attached is a truncated version of run_data.star file with the first
> 100 lines
>
>
>   Thanks for help.
>
>   Ibrahim
>
> ------------------------------
> *From:* Grigory Sharov <sha...@gm...>
> *Sent:* Thursday, December 24, 2020 5:58 AM
> *To:* Mailing list for Scipion users <sci...@li...>
> *Subject:* Re: [scipion-users] Import relion particles error
>
> Hello Ibrahim,
>
> could you please provide the following information so I could investigate
> further:
>
> 1) what relion plugin version do you use? (scipion3 installp -h)
> 2) do you import particles from a _data star file?
> 3) could you print here the first 100 lines of this star file?
>
> Thanks!
>
> Best regards,
> Grigory
>
>
> --------------------------------------------------------------------------------
> Grigory Sharov, Ph.D.
>
> MRC Laboratory of Molecular Biology,
> Francis Crick Avenue,
> Cambridge Biomedical Campus,
> Cambridge CB2 0QH, UK.
> tel. +44 (0) 1223 267228 <+44%201223%20267228>
> e-mail: gs...@mr...
>
>
> On Thu, Dec 24, 2020 at 7:45 AM Moustafa, Ibrahim M. <ri...@ps...> wrote:
>
> Dear all,
>
>   I am trying to import particles from relion.3.1.622 in Scipion v3.0.4
>  but I get the following error:
>
> Protocol failed: 'Row' object has no attribute 'rlnCtfMaxResolution'
>
> Not sure why convert31.py is not able to import the particles, insisting
> to read an attribute that does not exist in the star file.
>
>   Any suggestion will be appreciated.
>
>    Thank you,
>    Ibrahim
>
>
> _______________________________________________
> scipion-users mailing list
> sci...@li...
> https://lists.sourceforge.net/lists/listinfo/scipion-users
> <https://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Flists.sourceforge.net%2Flists%2Flistinfo%2Fscipion-users&data=04%7C01%7Cria2%40psu.edu%7Ca622cf49455d4d4d21df08d8a7faf54a%7C7cf48d453ddb4389a9c1c115526eb52e%7C0%7C0%7C637444043609394645%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=A3QvALsCnXCCfWeeYFt1aEq6t3Jadghuy04ukazXUqI%3D&reserved=0>
>
> _______________________________________________
> scipion-users mailing list
> sci...@li...
> https://lists.sourceforge.net/lists/listinfo/scipion-users
>