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Re: [scipion-users] error installing deepLearningToolkitUtils
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From: David M. <dma...@ub...> - 2020-12-23 11:26:12
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Hi Ane-Pascale, Probably you never got my mail due to a misconfiguration on my mail server. My apologies. To be honest, I can't recognize this error. The only thing that rings the bell is the last message 《Item deepLearningToolkit-0.2[scipion-em-xmipp] already exists》 which is totally weird. Can you post here the returning message for the next commands: 'scipion3 python -m pip list', 'scipion3 installp --help' and 'scipion3 installb'. Thanks and sorry for the inconveniences.. <http://ucm.es/> _____ Dr. David Maluenda Niubó dma...@ub...<mailto:dma...@ub...> - (+34) 619 029 310 Wavefront Engineering Group<https://webgrec.ub.edu/cgi-bin/3DADREC/crfitgrup.cgi?PAR=GRENFONA> Applied Physics - UB<https://www.ub.edu/portal/web/dp-fisica-aplicada> This email message and any documents attached to it may contain confidential or legally protected material and are intended solely for the use of the individual or organization to whom they are addressed. We remind you that if you are not the intended recipient of this email message or the person responsible for processing it, then you are not authorized to read, save, modify, send, copy or disclose any of its contents. If you have received this email message by mistake, we kindly ask you to inform the sender of this and to eliminate both the message and any attachments it carries from your account. Thank you for your collaboration. On Tue, Dec 8, 2020 at 5:15 PM David Maluenda <dma...@cn...<mailto:dma...@cn...>> wrote: Hi Ane-Pascale, To be honest, I can't recognize this error. The only thing that rings the bell is the last message 《Item deepLearningToolkit-0.2[scipion-em-xmipp] already exists》 which is totally weird. Can you post here the returning message for the next commands: 'scipion3 python -m pip list', 'scipion3 installp --help' and 'scipion3 installb'. Thanks and sorry for the inconveniences.. _____ Dr. David Maluenda Niubó (+34) 619.029.310 - dma...@ub...<mailto:dma...@ub...> Wavefront Engineering Group Applied Physics (UB) El lun., 7 dic. 2020 10:23, Anne-Pascale JAUDIER <ann...@i2...<mailto:ann...@i2...>> escribió: Hi Gregory, Effectively Ihave installed it from the command line without error. Thanks a lot, Anne-Pascale ---------------------------------------------------------------------- Anne-Pascale Jaudier SICS – I2BC Bat 34 - 1 avenue de la terrasse - 91198 Gif sur Yvette 01 69 82 34 74 ________________________________ De: "Grigory Sharov" <sha...@gm...<mailto:sha...@gm...>> À: "scipion-users" <sci...@li...<mailto:sci...@li...>> Envoyé: Samedi 5 Décembre 2020 14:32:44 Objet: Re: [scipion-users] error installing deepLearningToolkitUtils Hi Anne-Pascale, I'm not familiar with either xmipp or plugin manager code but have you tried "scipion installb deepLearningToolkit" from the command line? It will take about 20 min to install though.. Best regards, Grigory -------------------------------------------------------------------------------- Grigory Sharov, Ph.D. MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge Biomedical Campus, Cambridge CB2 0QH, UK. tel. +44 (0) 1223 267228<tel:+44%201223%20267228> e-mail: gs...@mr...<mailto:gs...@mr...> On Fri, Dec 4, 2020 at 9:13 AM Anne-Pascale JAUDIER <ann...@i2...<mailto:ann...@i2...>> wrote: Hi, I have an error during the installation of the pluggin deepLearningToolkitUtils. The error is : ------------------------------------ /bin/sh: 1: update: not found 00002: Exception in thread plugin-manager: 00003: Traceback (most recent call last): 00004: File "/home/anne-pascale.jaudier/.conda/envs/.scipion3env/lib/python3.8/threading.py", line 932, in _bootstrap_inner 00005: self.run() 00006: File "/home/anne-pascale.jaudier/.conda/envs/.scipion3env/lib/python3.8/threading.py", line 870, in run 00007: self._target(*self._args, **self._kwargs) 00008: File "/home/anne-pascale.jaudier/.conda/envs/.scipion3env/lib/python3.8/site-packages/scipion/install/plugin_manager.py", line 740, in _applyOperations 00009: self.reloadInstalledPlugin(op.getObjParent()) 00010: File "/home/anne-pascale.jaudier/.conda/envs/.scipion3env/lib/python3.8/site-packages/scipion/install/plugin_manager.py", line 898, in reloadInstalledPlugin 00011: self.tree.insert(pluginName, "end", 00012: File "/home/anne-pascale.jaudier/.conda/envs/.scipion3env/lib/python3.8/site-packages/scipion/install/plugin_manager.py", line 103, in insert 00013: ttk.Treeview.insert(self, parent, index, iid, **kw) 00014: File "/home/anne-pascale.jaudier/.conda/envs/.scipion3env/lib/python3.8/tkinter/ttk.py", line 1366, in insert 00015: res = self.tk.call(self._w, "insert", parent, index, 00016: _tkinter.TclError: Item deepLearningToolkit-0.2[scipion-em-xmipp] already exists ----------------------------- Thanks, Anne-Pascale ---------------------------------------------------------------------- Anne-Pascale Jaudier SICS – I2BC Bat 34 - 1 avenue de la terrasse - 91198 Gif sur Yvette 01 69 82 34 74 _______________________________________________ scipion-users mailing list sci...@li...<mailto:sci...@li...> https://lists.sourceforge.net/lists/listinfo/scipion-users _______________________________________________ scipion-users mailing list sci...@li...<mailto:sci...@li...> https://lists.sourceforge.net/lists/listinfo/scipion-users Aquest missatge, i els fitxers adjunts que hi pugui haver, pot contenir informació confidencial o protegida legalment i s’adreça exclusivament a la persona o entitat destinatària. Si no consteu com a destinatari final o no teniu l’encàrrec de rebre’l, no esteu autoritzat a llegir-lo, retenir-lo, modificar-lo, distribuir-lo, copiar-lo ni a revelar-ne el contingut. Si l’heu rebut per error, informeu-ne el remitent i elimineu del sistema tant el missatge com els fitxers adjunts que hi pugui haver. Este mensaje, y los ficheros adjuntos que pueda incluir, puede contener información confidencial o legalmente protegida y está exclusivamente dirigido a la persona o entidad destinataria. Si usted no consta como destinatario final ni es la persona encargada de recibirlo, no está autorizado a leerlo, retenerlo, modificarlo, distribuirlo o copiarlo, ni a revelar su contenido. Si lo ha recibido por error, informe de ello al remitente y elimine del sistema tanto el mensaje como los ficheros adjuntos que pueda contener. This email message and any attachments it carries may contain confidential or legally protected material and are intended solely for the individual or organization to whom they are addressed. If you are not the intended recipient of this message or the person responsible for processing it, then you are not authorized to read, save, modify, send, copy or disclose any part of it. If you have received the message by mistake, please inform the sender of this and eliminate the message and any attachments it carries from your account. _______________________________________________ scipion-users mailing list sci...@li...<mailto:sci...@li...> https://lists.sourceforge.net/lists/listinfo/scipion-users Aquest missatge, i els fitxers adjunts que hi pugui haver, pot contenir informació confidencial o protegida legalment i s’adreça exclusivament a la persona o entitat destinatària. Si no consteu com a destinatari final o no teniu l’encàrrec de rebre’l, no esteu autoritzat a llegir-lo, retenir-lo, modificar-lo, distribuir-lo, copiar-lo ni a revelar-ne el contingut. Si l’heu rebut per error, informeu-ne el remitent i elimineu del sistema tant el missatge com els fitxers adjunts que hi pugui haver. Este mensaje, y los ficheros adjuntos que pueda incluir, puede contener información confidencial o legalmente protegida y está exclusivamente dirigido a la persona o entidad destinataria. Si usted no consta como destinatario final ni es la persona encargada de recibirlo, no está autorizado a leerlo, retenerlo, modificarlo, distribuirlo o copiarlo, ni a revelar su contenido. Si lo ha recibido por error, informe de ello al remitente y elimine del sistema tanto el mensaje como los ficheros adjuntos que pueda contener. This email message and any attachments it carries may contain confidential or legally protected material and are intended solely for the individual or organization to whom they are addressed. If you are not the intended recipient of this message or the person responsible for processing it, then you are not authorized to read, save, modify, send, copy or disclose any part of it. If you have received the message by mistake, please inform the sender of this and eliminate the message and any attachments it carries from your account. |
