Re: [scipion-users] error installing deepLearningToolkitUtils

[Anne-Pascale J. <ann...@i2...>]

Hi Gregory, 

Effectively Ihave installed it from the command line without error. 

Thanks a lot, 
Anne-Pascale 

---------------------------------------------------------------------- 
Anne-Pascale Jaudier 
SICS – I2BC 
Bat 34 - 1 avenue de la terrasse - 91198 Gif sur Yvette 
01 69 82 34 74 


De: "Grigory Sharov" <sha...@gm...> 
À: "scipion-users" <sci...@li...> 
Envoyé: Samedi 5 Décembre 2020 14:32:44 
Objet: Re: [scipion-users] error installing deepLearningToolkitUtils 

Hi Anne-Pascale, 

I'm not familiar with either xmipp or plugin manager code but have you tried " scipion installb deepLearningToolkit " from the command line? It will take about 20 min to install though.. 

Best regards, 
Grigory 
-------------------------------------------------------------------------------- 
Grigory Sharov, Ph.D. 

MRC Laboratory of Molecular Biology, 
Francis Crick Avenue, 
Cambridge Biomedical Campus, 
Cambridge CB2 0QH, UK. 
tel. [ tel:+44%201223%20267228 | +44 (0) 1223 267228 ] 
e-mail: [ mailto:gs...@mr... | gs...@mr... ] 


On Fri, Dec 4, 2020 at 9:13 AM Anne-Pascale JAUDIER < [ mailto:ann...@i2... | ann...@i2... ] > wrote: 


Hi, 

I have an error during the installation of the pluggin deepLearningToolkitUtils. 
The error is : 

------------------------------------ 
/bin/sh: 1: update: not found 
00002: Exception in thread plugin-manager: 
00003: Traceback (most recent call last): 
00004: File "/home/anne-pascale.jaudier/.conda/envs/.scipion3env/lib/python3.8/threading.py", line 932, in _bootstrap_inner 
00005: self.run() 
00006: File "/home/anne-pascale.jaudier/.conda/envs/.scipion3env/lib/python3.8/threading.py", line 870, in run 
00007: self._target(*self._args, **self._kwargs) 
00008: File "/home/anne-pascale.jaudier/.conda/envs/.scipion3env/lib/python3.8/site-packages/scipion/install/plugin_manager.py", line 740, in _applyOperations 
00009: self.reloadInstalledPlugin(op.getObjParent()) 
00010: File "/home/anne-pascale.jaudier/.conda/envs/.scipion3env/lib/python3.8/site-packages/scipion/install/plugin_manager.py", line 898, in reloadInstalledPlugin 
00011: self.tree.insert(pluginName, "end", 
00012: File "/home/anne-pascale.jaudier/.conda/envs/.scipion3env/lib/python3.8/site-packages/scipion/install/plugin_manager.py", line 103, in insert 
00013: ttk.Treeview.insert(self, parent, index, iid, **kw) 
00014: File "/home/anne-pascale.jaudier/.conda/envs/.scipion3env/lib/python3.8/tkinter/ttk.py", line 1366, in insert 
00015: res = self.tk.call(self._w, "insert", parent, index, 
00016: _tkinter.TclError: Item deepLearningToolkit-0.2[scipion-em-xmipp] already exists 

----------------------------- 

Thanks, 
Anne-Pascale 

---------------------------------------------------------------------- 
Anne-Pascale Jaudier 
SICS – I2BC 
Bat 34 - 1 avenue de la terrasse - 91198 Gif sur Yvette 
01 69 82 34 74 


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