Re: [scipion-users] error installing deepLearningToolkitUtils

[Grigory S. <sha...@gm...>]

Hi Anne-Pascale,

I'm not familiar with either xmipp or plugin manager code but have you
tried "*scipion installb **deepLearningToolkit*" from the command line? It
will take about 20 min to install though..

Best regards,
Grigory
--------------------------------------------------------------------------------
Grigory Sharov, Ph.D.

MRC Laboratory of Molecular Biology,
Francis Crick Avenue,
Cambridge Biomedical Campus,
Cambridge CB2 0QH, UK.
tel. +44 (0) 1223 267228 <+44%201223%20267228>
e-mail: gs...@mr...


On Fri, Dec 4, 2020 at 9:13 AM Anne-Pascale JAUDIER <
ann...@i2...> wrote:

> Hi,
>
> I have an error during the installation of the pluggin
> deepLearningToolkitUtils.
> The error is :
>
> ------------------------------------
> /bin/sh: 1: update: not found
> 00002:   Exception in thread plugin-manager:
> 00003:   Traceback (most recent call last):
> 00004:     File
> "/home/anne-pascale.jaudier/.conda/envs/.scipion3env/lib/python3.8/threading.py",
> line 932, in _bootstrap_inner
> 00005:       self.run()
> 00006:     File
> "/home/anne-pascale.jaudier/.conda/envs/.scipion3env/lib/python3.8/threading.py",
> line 870, in run
> 00007:       self._target(*self._args, **self._kwargs)
> 00008:     File
> "/home/anne-pascale.jaudier/.conda/envs/.scipion3env/lib/python3.8/site-packages/scipion/install/plugin_manager.py",
> line 740, in _applyOperations
> 00009:       self.reloadInstalledPlugin(op.getObjParent())
> 00010:     File
> "/home/anne-pascale.jaudier/.conda/envs/.scipion3env/lib/python3.8/site-packages/scipion/install/plugin_manager.py",
> line 898, in reloadInstalledPlugin
> 00011:       self.tree.insert(pluginName, "end",
> 00012:     File
> "/home/anne-pascale.jaudier/.conda/envs/.scipion3env/lib/python3.8/site-packages/scipion/install/plugin_manager.py",
> line 103, in insert
> 00013:       ttk.Treeview.insert(self, parent, index, iid, **kw)
> 00014:     File
> "/home/anne-pascale.jaudier/.conda/envs/.scipion3env/lib/python3.8/tkinter/ttk.py",
> line 1366, in insert
> 00015:       res = self.tk.call(self._w, "insert", parent, index,
> 00016:   _tkinter.TclError: Item deepLearningToolkit-0.2[scipion-em-xmipp]
> already exists
>
> -----------------------------
>
> Thanks,
> Anne-Pascale
>
> ----------------------------------------------------------------------
> Anne-Pascale Jaudier
> SICS – I2BC
> Bat 34 - 1 avenue de la terrasse - 91198 Gif sur Yvette
> 01 69 82 34 74
>
>
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