Re: [scipion-users] error with protocols in Scipion3 CTF correction step

[Jose M. de la R. T. <del...@gm...>]

Dear Ana,

Can you take a look a the error from Gctf logs?
It is not creating any output, but it would be good to take a look at the
error in the logs.
Do you have setup the gctf binary version according to your Cuda version?
(in scipion.conf file)

Best,
Jose Miguel


On Wed, Nov 25, 2020 at 9:53 AM Ana Andreea ARTENI <
ana...@i2...> wrote:

>
> Dear Grigory,
>
> After installing Relion3, and start doing the mix and patch tutorial we
> have the following errors:
>
> At the CTF step:
>
>  via gctf:
>
> The test: scipion3 tests gctf.tests.test_protocols_gctf  gives no errors,
> but the output looks as in the image attached (that shows no psd and no
> correct values for the parameters).
> Any idea what is wrong and how can we fix this?
> --------------------------------------------
>
> via ctffind4
> METHODS:
> > cistem - ctffind4
> ERROR generating methods info: 'CistemProtCTFFind' object has no attribute
> 'outputCTF'
>
> File 'Runs/000979_CistemProtCTFFind/logs/run.stdout' doesn't existFile
> 'Runs/000979_CistemProtCTFFind/logs/run.stdout' doesn't existFile
> 'Runs/000979_CistemProtCTFFind/logs/run.stdout' doesn't existFile
> 'Runs/000979_CistemProtCTFFind/logs/run.stdout' doesn't existFile
> 'Runs/000979_CistemProtCTFFind/logs/run.stdout' doesn't existFile
> 'Runs/000979_CistemProtCTFFind/logs/run.stdout' doesn't existFile
> 'Runs/000979_CistemProtCTFFind/logs/run.stdout' doesn't existFile
> 'Runs/000979_CistemProtCTFFind/logs/run.stdout' doesn't existFile
> 'Runs/000979_CistemProtCTFFind/logs/run.stdout' doesn't existFile
> 'Runs/000979_CistemProtCTFFind/logs/run.stdout' doesn't exist
>
> Need also help here...
> My kind regards,
>                   ana.
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