[scipion-users] SCIPION__3___installing plugins/protocols

[Dmitry S. <Sem...@gm...>]

 <>Dear colleagues,

 We have some issues during SCIPION3 plugins installations.

 Any suggestions?

 Thank you!

 

Sincerely,

Dmitry

 

 

 

Motion cor error:



00279:   WARNING: Micrograph Runs/000174_ProtMotionCorr/extra/20170629_00049_frameImage_aligned_mic_DW.mrc was not generated, can't add it to output set.

00280:   STARTED: createOutputStep, step 26, time 2020-11-20 14:16:28.063854

00281:   Traceback (most recent call last):

00282:     File "/opt/Scipion3/.scipion3env/lib/python3.6/site-packages/pyworkflow/protocol/protocol.py", line 187, in run

00283:       self._run()

00284:     File "/opt/Scipion3/.scipion3env/lib/python3.6/site-packages/pyworkflow/protocol/protocol.py", line 238, in _run

00285:       resultFiles = self._runFunc()

00286:     File "/opt/Scipion3/.scipion3env/lib/python3.6/site-packages/pyworkflow/protocol/protocol.py", line 234, in _runFunc

00287:       return self._func(*self._args)

00288:     File "/opt/Scipion3/.scipion3env/lib/python3.6/site-packages/pwem/protocols/protocol_align_movies.py", line 120, in createOutputStep

00289:       raise Exception("All movies failed, didn't create outputMicrographs."

00290:   Exception: All movies failed, didn't create outputMicrographs.Please review movie processing steps above.

00291:   Protocol failed: All movies failed, didn't create outputMicrographs. Please review movie processing steps above.

00292:   FAILED: createOutputStep, step 26, time 2020-11-20 14:16:28.070889

00293:   ------------------- PROTOCOL FAILED (DONE 26/26)

 

GCTF:

 

00279:   WARNING: Micrograph Runs/000174_ProtMotionCorr/extra/20170629_00049_frameImage_aligned_mic_DW.mrc was not generated, can't add it to output set.

00280:   STARTED: createOutputStep, step 26, time 2020-11-20 14:16:28.063854

00281:   Traceback (most recent call last):

00282:     File "/opt/Scipion3/.scipion3env/lib/python3.6/site-packages/pyworkflow/protocol/protocol.py", line 187, in run

00283:       self._run()

00284:     File "/opt/Scipion3/.scipion3env/lib/python3.6/site-packages/pyworkflow/protocol/protocol.py", line 238, in _run

00285:       resultFiles = self._runFunc()

00286:     File "/opt/Scipion3/.scipion3env/lib/python3.6/site-packages/pyworkflow/protocol/protocol.py", line 234, in _runFunc

00287:       return self._func(*self._args)

00288:     File "/opt/Scipion3/.scipion3env/lib/python3.6/site-packages/pwem/protocols/protocol_align_movies.py", line 120, in createOutputStep

00289:       raise Exception("All movies failed, didn't create outputMicrographs."

00290:   Exception: All movies failed, didn't create outputMicrographs.Please review movie processing steps above.

00291:   Protocol failed: All movies failed, didn't create outputMicrographs.Please review movie processing steps above.

00292:   FAILED: createOutputStep, step 26, time 2020-11-20 14:16:28.070889

00293:   ------------------- PROTOCOL FAILED (DONE 26/26)