Re: [scipion-users] Installation trouble

SourceForge Headquarters 225 Broadway Suite 1600 San Diego, CA 92101 +1 (858) 422-6466

What if you download
https://raw.githubusercontent.com/I2PC/xmipp/v3.20.07-Boreas/xmipp file
into this folder and replace the old one (make it executable as well) and
then try again step 4, does it still fail?

Best regards,
Grigory

--------------------------------------------------------------------------------
Grigory Sharov, Ph.D.

MRC Laboratory of Molecular Biology,
Francis Crick Avenue,
Cambridge Biomedical Campus,
Cambridge CB2 0QH, UK.
tel. +44 (0) 1223 267228 <+44%201223%20267228>
e-mail: gs...@mr...

On Thu, Oct 29, 2020 at 3:27 PM Tetter Stephan <tet...@or...>
wrote:

> Dear Grigory,
>
> Step 4 does indeed cause trouble:
>
> (.scipion3env) hilvertg@bamf:~/tetterst/software/em/xmippSrc-v3.20.07$
> ./xmipp config
> Traceback (most recent call last):
>   File "./xmipp", line 1753, in <module>
>     XMIPP_SCRIPT_VERSION = getScriptVersion()
>   File "./xmipp", line 1718, in getScriptVersion
>     return lastCommit[0].strip()
> IndexError: list index out of range
>
> What does that mean?
>
> Thanks,
> Stephan
>
>
> ------------------------------
> *Von:* Grigory Sharov <sha...@gm...>
> *Gesendet:* Mittwoch, 28. Oktober 2020 10:38:04
> *An:* Mailing list for Scipion users
> *Betreff:* Re: [scipion-users] Installation trouble
>
> Hi Tetter,
>
> Could you try the following steps manually:
>
> 1) conda activate .scipion3env
> 2) cd /home/hilvertg/tetterst/software/em/xmippSrc-v3.20.07
> 3) rm -f xmipp.conf
> 4) ./xmipp config
> 5) ./xmipp check_config
> 6) ./xmipp compileAndInstall N=4
> 7) ln -srfn build /home/hilvertg/tetterst/software/em/xmipp
>
> If you have errors in step 4, please post it here.
>
> Best regards,
> Grigory
>
>
> --------------------------------------------------------------------------------
> Grigory Sharov, Ph.D.
>
> MRC Laboratory of Molecular Biology,
> Francis Crick Avenue,
> Cambridge Biomedical Campus,
> Cambridge CB2 0QH, UK.
> tel. +44 (0) 1223 267228 <+44%201223%20267228>
> e-mail: gs...@mr...
>
>
> On Wed, Oct 28, 2020 at 9:00 AM Tetter Stephan <tet...@or...>
> wrote:
>
>> Dear all,
>>
>>
>> I am trying to install Scipion for single particle analysis, and more
>> specifically for symmetry relaxation. Unfortunately I can't seem to get the
>> installation to work. I am working with Ubuntu 16.04. Please be aware that
>> I am not a well-versed Ubuntu user.
>>
>>
>> I have tried installation both via the conda version and the virtualenv
>> version described on
>> https://scipion-em.github.io/docs/docs/scipion-modes/install-from-sources#fixing-fonts-in-a-conda-installation,
>> but they both fail eventually. (I have changed the export PATH line to
>> point to sr/local/cuda-9.0/bin to fit my setup.)
>>
>>
>> Below is what happens. Any ideas?
>>
>>
>> Thanks,
>>
>>
>> Stephan
>>
>>
>> hilvertg@bamf:~$ sudo apt-get install gcc g++ make libopenmpi-dev
>> python3-tk libfftw3-dev libhdf5-dev libtiff-dev libjpeg-dev libsqlite3-dev
>> openjdk-8-jdk
>> Reading package lists... Done
>> Building dependency tree
>> Reading state information... Done
>> Note, selecting 'libtiff5-dev' instead of 'libtiff-dev'
>> g++ is already the newest version (4:5.3.1-1ubuntu1).
>> gcc is already the newest version (4:5.3.1-1ubuntu1).
>> libfftw3-dev is already the newest version (3.3.4-2ubuntu1).
>> libjpeg-dev is already the newest version (8c-2ubuntu8).
>> make is already the newest version (4.1-6).
>> python3-tk is already the newest version (3.5.1-1).
>> libopenmpi-dev is already the newest version (1.10.2-8ubuntu1).
>> libsqlite3-dev is already the newest version (3.11.0-1ubuntu1.5).
>> libtiff5-dev is already the newest version (4.0.6-1ubuntu0.7).
>> openjdk-8-jdk is already the newest version (8u272-b10-0ubuntu1~16.04).
>> libhdf5-dev is already the newest version (1.8.16+docs-4ubuntu1.1).
>> 0 upgraded, 0 newly installed, 0 to remove and 64 not upgraded.
>>
>> hilvertg@bamf:~$ export PATH=$PATH:/usr/local/cuda-9.0/bin
>>
>>
>> hilvertg@bamf:~$ python -m pip install --user
>> scipion-installerRequirement already satisfied: scipion-installer in
>> ./.local/lib/python2.7/site-packages (1.0.9)
>> Requirement already satisfied: virtualenv in
>> ./.local/lib/python2.7/site-packages (from scipion-installer) (20.1.0)
>> Requirement already satisfied: six<2,>=1.9.0 in
>> /usr/local/lib/python2.7/dist-packages (from virtualenv->scipion-installer)
>> (1.10.0)
>> Requirement already satisfied: appdirs<2,>=1.4.3 in
>> ./.local/lib/python2.7/site-packages (from virtualenv->scipion-installer)
>> (1.4.4)
>> Requirement already satisfied: distlib<1,>=0.3.1 in
>> ./.local/lib/python2.7/site-packages (from virtualenv->scipion-installer)
>> (0.3.1)
>> Requirement already satisfied: importlib-resources>=1.0; python_version <
>> "3.7" in ./.local/lib/python2.7/site-packages (from
>> virtualenv->scipion-installer) (3.2.0)
>> Requirement already satisfied: importlib-metadata<3,>=0.12;
>> python_version < "3.8" in ./.local/lib/python2.7/site-packages (from
>> virtualenv->scipion-installer) (2.0.0)
>> Requirement already satisfied: filelock<4,>=3.0.0 in
>> ./.local/lib/python2.7/site-packages (from virtualenv->scipion-installer)
>> (3.0.12)
>> Requirement already satisfied: pathlib2<3,>=2.3.3; python_version < "3.4"
>> and sys_platform != "win32" in ./.local/lib/python2.7/site-packages (from
>> virtualenv->scipion-installer) (2.3.5)
>> Requirement already satisfied: typing; python_version < "3.5" in
>> ./.local/lib/python2.7/site-packages (from importlib-resources>=1.0;
>> python_version < "3.7"->virtualenv->scipion-installer) (3.7.4.3)
>> Requirement already satisfied: contextlib2; python_version < "3" in
>> ./.local/lib/python2.7/site-packages (from importlib-resources>=1.0;
>> python_version < "3.7"->virtualenv->scipion-installer) (0.6.0.post1)
>> Requirement already satisfied: zipp>=0.4; python_version < "3.8" in
>> ./.local/lib/python2.7/site-packages (from importlib-resources>=1.0;
>> python_version < "3.7"->virtualenv->scipion-installer) (1.2.0)
>> Requirement already satisfied: singledispatch; python_version < "3.4" in
>> ./.local/lib/python2.7/site-packages (from importlib-resources>=1.0;
>> python_version < "3.7"->virtualenv->scipion-installer) (3.4.0.3)
>> Requirement already satisfied: configparser>=3.5; python_version < "3" in
>> ./.local/lib/python2.7/site-packages (from importlib-metadata<3,>=0.12;
>> python_version < "3.8"->virtualenv->scipion-installer) (4.0.2)
>> Requirement already satisfied: scandir; python_version < "3.5" in
>> /usr/local/lib/python2.7/dist-packages (from pathlib2<3,>=2.3.3;
>> python_version < "3.4" and sys_platform !=
>> "win32"->virtualenv->scipion-installer) (1.9.0)
>>
>>
>> hilvertg@bamf:~$ python3 -m scipioninstaller ~/tetterst -venv -j
>> 4created virtual environment CPython3.5.2.final.0-64 in 99ms
>>   creator CPython3Posix(dest=/home/hilvertg/tetterst/.scipion3env,
>> clear=False, global=False)
>>   seeder FromAppData(download=False, wheel=bundle, setuptools=bundle,
>> pip=bundle, via=copy, app_data_dir=/home/hilvertg/.local/share/virtualenv)
>>     added seed packages: Pillow==7.1.2, SCons==4.0.1,
>> bibtexparser==1.2.0, biopython==1.76, certifi==2020.6.20, chardet==3.0.4,
>> configparser==4.0.2, cycler==0.10.0, future==0.18.2, idna==2.10,
>> joblib==0.14.1, kiwisolver==1.1.0, littleutils==0.2.2, matplotlib==3.0.3,
>> numpy==1.18.4, outdated==0.2.0, peppercorn==0.6, pip==20.2.4,
>> plotter==1.3.17, psutil==5.7.0, pyparsing==2.4.7, python_dateutil==2.8.1,
>> requests==2.23.0, scikit_learn==0.22.1, scipion_app==3.0.5,
>> scipion_em==3.0.4, scipion_em_xmipp==20.7.1, scipion_pyworkflow==3.0.5,
>> scipy==1.4.1, setuptools==50.3.2, six==1.15.0, urllib3==1.25.11,
>> wheel==0.35.1
>>   activators
>> PythonActivator,FishActivator,PowerShellActivator,CShellActivator,XonshActivator,BashActivator
>> DEPRECATION: Python 3.5 reached the end of its life on September 13th,
>> 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip
>> 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove
>> support for this functionality.
>> Requirement already satisfied: scipion-pyworkflow in
>> ./.scipion3env/lib/python3.5/site-packages (3.0.5)
>> Requirement already satisfied: matplotlib<=3.2.2 in
>> ./.scipion3env/lib/python3.5/site-packages (from scipion-pyworkflow) (3.0.3)
>> Requirement already satisfied: psutil<=5.7.0 in
>> ./.scipion3env/lib/python3.5/site-packages (from scipion-pyworkflow) (5.7.0)
>> Requirement already satisfied: requests<=2.23.0 in
>> ./.scipion3env/lib/python3.5/site-packages (from scipion-pyworkflow)
>> (2.23.0)
>> Requirement already satisfied: numpy<=1.18.4 in
>> ./.scipion3env/lib/python3.5/site-packages (from scipion-pyworkflow)
>> (1.18.4)
>> Requirement already satisfied: pillow<=7.1.2 in
>> ./.scipion3env/lib/python3.5/site-packages (from scipion-pyworkflow) (7.1.2)
>> Requirement already satisfied: bibtexparser<=1.2.0 in
>> ./.scipion3env/lib/python3.5/site-packages (from scipion-pyworkflow) (1.2.0)
>> Requirement already satisfied: configparser<=5.0.0 in
>> ./.scipion3env/lib/python3.5/site-packages (from scipion-pyworkflow) (4.0.2)
>> Requirement already satisfied: cycler>=0.10 in
>> ./.scipion3env/lib/python3.5/site-packages (from
>> matplotlib<=3.2.2->scipion-pyworkflow) (0.10.0)
>> Requirement already satisfied: python-dateutil>=2.1 in
>> ./.scipion3env/lib/python3.5/site-packages (from
>> matplotlib<=3.2.2->scipion-pyworkflow) (2.8.1)
>> Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1
>> in ./.scipion3env/lib/python3.5/site-packages (from
>> matplotlib<=3.2.2->scipion-pyworkflow) (2.4.7)
>> Requirement already satisfied: kiwisolver>=1.0.1 in
>> ./.scipion3env/lib/python3.5/site-packages (from
>> matplotlib<=3.2.2->scipion-pyworkflow) (1.1.0)
>> Requirement already satisfied: certifi>=2017.4.17 in
>> ./.scipion3env/lib/python3.5/site-packages (from
>> requests<=2.23.0->scipion-pyworkflow) (2020.6.20)
>> Requirement already satisfied: idna<3,>=2.5 in
>> ./.scipion3env/lib/python3.5/site-packages (from
>> requests<=2.23.0->scipion-pyworkflow) (2.10)
>> Requirement already satisfied: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in
>> ./.scipion3env/lib/python3.5/site-packages (from
>> requests<=2.23.0->scipion-pyworkflow) (1.25.11)
>> Requirement already satisfied: chardet<4,>=3.0.2 in
>> ./.scipion3env/lib/python3.5/site-packages (from
>> requests<=2.23.0->scipion-pyworkflow) (3.0.4)
>> Requirement already satisfied: future>=0.16.0 in
>> ./.scipion3env/lib/python3.5/site-packages (from
>> bibtexparser<=1.2.0->scipion-pyworkflow) (0.18.2)
>> Requirement already satisfied: six in
>> ./.scipion3env/lib/python3.5/site-packages (from
>> cycler>=0.10->matplotlib<=3.2.2->scipion-pyworkflow) (1.15.0)
>> Requirement already satisfied: setuptools in
>> ./.scipion3env/lib/python3.5/site-packages (from
>> kiwisolver>=1.0.1->matplotlib<=3.2.2->scipion-pyworkflow) (50.3.2)
>> DEPRECATION: Python 3.5 reached the end of its life on September 13th,
>> 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip
>> 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove
>> support for this functionality.
>> Requirement already satisfied: scipion-app in
>> ./.scipion3env/lib/python3.5/site-packages (3.0.5)
>> Requirement already satisfied: outdated==0.2.0 in
>> ./.scipion3env/lib/python3.5/site-packages (from scipion-app) (0.2.0)
>> Requirement already satisfied: scipion-em in
>> ./.scipion3env/lib/python3.5/site-packages (from scipion-app) (3.0.4)
>> Requirement already satisfied: littleutils in
>> ./.scipion3env/lib/python3.5/site-packages (from
>> outdated==0.2.0->scipion-app) (0.2.2)
>> Requirement already satisfied: requests in
>> ./.scipion3env/lib/python3.5/site-packages (from
>> outdated==0.2.0->scipion-app) (2.23.0)
>> Requirement already satisfied: scipion-pyworkflow in
>> ./.scipion3env/lib/python3.5/site-packages (from scipion-em->scipion-app)
>> (3.0.5)
>> Requirement already satisfied: biopython==1.76 in
>> ./.scipion3env/lib/python3.5/site-packages (from scipion-em->scipion-app)
>> (1.76)
>> Requirement already satisfied: idna<3,>=2.5 in
>> ./.scipion3env/lib/python3.5/site-packages (from
>> requests->outdated==0.2.0->scipion-app) (2.10)
>> Requirement already satisfied: chardet<4,>=3.0.2 in
>> ./.scipion3env/lib/python3.5/site-packages (from
>> requests->outdated==0.2.0->scipion-app) (3.0.4)
>> Requirement already satisfied: certifi>=2017.4.17 in
>> ./.scipion3env/lib/python3.5/site-packages (from
>> requests->outdated==0.2.0->scipion-app) (2020.6.20)
>> Requirement already satisfied: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in
>> ./.scipion3env/lib/python3.5/site-packages (from
>> requests->outdated==0.2.0->scipion-app) (1.25.11)
>> Requirement already satisfied: matplotlib<=3.2.2 in
>> ./.scipion3env/lib/python3.5/site-packages (from
>> scipion-pyworkflow->scipion-em->scipion-app) (3.0.3)
>> Requirement already satisfied: configparser<=5.0.0 in
>> ./.scipion3env/lib/python3.5/site-packages (from
>> scipion-pyworkflow->scipion-em->scipion-app) (4.0.2)
>> Requirement already satisfied: numpy<=1.18.4 in
>> ./.scipion3env/lib/python3.5/site-packages (from
>> scipion-pyworkflow->scipion-em->scipion-app) (1.18.4)
>> Requirement already satisfied: pillow<=7.1.2 in
>> ./.scipion3env/lib/python3.5/site-packages (from
>> scipion-pyworkflow->scipion-em->scipion-app) (7.1.2)
>> Requirement already satisfied: bibtexparser<=1.2.0 in
>> ./.scipion3env/lib/python3.5/site-packages (from
>> scipion-pyworkflow->scipion-em->scipion-app) (1.2.0)
>> Requirement already satisfied: psutil<=5.7.0 in
>> ./.scipion3env/lib/python3.5/site-packages (from
>> scipion-pyworkflow->scipion-em->scipion-app) (5.7.0)
>> Requirement already satisfied: cycler>=0.10 in
>> ./.scipion3env/lib/python3.5/site-packages (from
>> matplotlib<=3.2.2->scipion-pyworkflow->scipion-em->scipion-app) (0.10.0)
>> Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1
>> in ./.scipion3env/lib/python3.5/site-packages (from
>> matplotlib<=3.2.2->scipion-pyworkflow->scipion-em->scipion-app) (2.4.7)
>> Requirement already satisfied: python-dateutil>=2.1 in
>> ./.scipion3env/lib/python3.5/site-packages (from
>> matplotlib<=3.2.2->scipion-pyworkflow->scipion-em->scipion-app) (2.8.1)
>> Requirement already satisfied: kiwisolver>=1.0.1 in
>> ./.scipion3env/lib/python3.5/site-packages (from
>> matplotlib<=3.2.2->scipion-pyworkflow->scipion-em->scipion-app) (1.1.0)
>> Requirement already satisfied: future>=0.16.0 in
>> ./.scipion3env/lib/python3.5/site-packages (from
>> bibtexparser<=1.2.0->scipion-pyworkflow->scipion-em->scipion-app) (0.18.2)
>> Requirement already satisfied: six in
>> ./.scipion3env/lib/python3.5/site-packages (from
>> cycler>=0.10->matplotlib<=3.2.2->scipion-pyworkflow->scipion-em->scipion-app)
>> (1.15.0)
>> Requirement already satisfied: setuptools in
>> ./.scipion3env/lib/python3.5/site-packages (from
>> kiwisolver>=1.0.1->matplotlib<=3.2.2->scipion-pyworkflow->scipion-em->scipion-app)
>> (50.3.2)
>> Scipion v3.0.5 () devel
>>
>>  >>> WARNING: Image library not found!
>>   > Please install Xmipp to get full functionality.
>> (Configuration->Plugins->scipion-em-xmipp -> expand, in Scipion plugin
>> manager window)
>>
>>
>> Building scipion-em-xmipp ...
>> /home/hilvertg/tetterst/.scipion3env/bin/python -m pip install
>> scipion-em-xmipp==20.7.1
>> DEPRECATION: Python 3.5 reached the end of its life on September 13th,
>> 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip
>> 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove
>> support for this functionality.
>> Requirement already satisfied: scipion-em-xmipp==20.7.1 in
>> ./.scipion3env/lib/python3.5/site-packages (20.7.1)
>> Requirement already satisfied: joblib in
>> ./.scipion3env/lib/python3.5/site-packages (from scipion-em-xmipp==20.7.1)
>> (0.14.1)
>> Requirement already satisfied: peppercorn in
>> ./.scipion3env/lib/python3.5/site-packages (from scipion-em-xmipp==20.7.1)
>> (0.6)
>> Requirement already satisfied: plotter in
>> ./.scipion3env/lib/python3.5/site-packages (from scipion-em-xmipp==20.7.1)
>> (1.3.17)
>> Requirement already satisfied: scons in
>> ./.scipion3env/lib/python3.5/site-packages (from scipion-em-xmipp==20.7.1)
>> (4.0.1)
>> Requirement already satisfied: scikit-learn==0.22.1 in
>> ./.scipion3env/lib/python3.5/site-packages (from scipion-em-xmipp==20.7.1)
>> (0.22.1)
>> Requirement already satisfied: setuptools in
>> ./.scipion3env/lib/python3.5/site-packages (from
>> scons->scipion-em-xmipp==20.7.1) (50.3.2)
>> Requirement already satisfied: scipy>=0.17.0 in
>> ./.scipion3env/lib/python3.5/site-packages (from
>> scikit-learn==0.22.1->scipion-em-xmipp==20.7.1) (1.4.1)
>> Requirement already satisfied: numpy>=1.11.0 in
>> ./.scipion3env/lib/python3.5/site-packages (from
>> scikit-learn==0.22.1->scipion-em-xmipp==20.7.1) (1.18.4)
>> Done (0.36 seconds)
>> Building xmippSrc-3.20.07 ...
>>   Skipping command: wget -nv -c -O
>> /home/hilvertg/tetterst/software/em/xmippSrc-v3.20.07.tgz.part
>> http://scipion.cnb.csic.es/downloads/scipion/software/em/xmippSrc-v3.20.07.tgz
>> mv -v /home/hilvertg/tetterst/software/em/xmippSrc-v3.20.07.tgz.part
>> /home/hilvertg/tetterst/software/em/xmippSrc-v3.20.07.tgz
>>   All targets exist.
>>   Skipping command: tar -xf xmippSrc-v3.20.07.tgz
>>   All targets exist.
>> cd /home/hilvertg/tetterst/software/em/xmippSrc-v3.20.07
>> cd . && ./xmipp config noAsk && ./xmipp check_config && ./xmipp
>> compileAndInstall N=4 && ln -srfn build
>> /home/hilvertg/tetterst/software/em/xmipp && cd - && touch
>> installation_finished && rm bindings_linked 2> /dev/null
>> Traceback (most recent call last):
>>   File "./xmipp", line 1753, in <module>
>>     XMIPP_SCRIPT_VERSION = getScriptVersion()
>>   File "./xmipp", line 1718, in getScriptVersion
>>     return lastCommit[0].strip()
>> IndexError: list index out of range
>> Traceback (most recent call last):
>>   File
>> "/home/hilvertg/tetterst/.scipion3env/lib/python3.5/site-packages/scipion/__main__.py",
>> line 453, in <module>
>>     main()
>>   File
>> "/home/hilvertg/tetterst/.scipion3env/lib/python3.5/site-packages/scipion/__main__.py",
>> line 296, in main
>>     installPluginMethods()
>>   File
>> "/home/hilvertg/tetterst/.scipion3env/lib/python3.5/site-packages/scipion/install/install_plugin.py",
>> line 231, in installPluginMethods
>>     plugin.installBin({'args': ['-j', numberProcessor]})
>>   File
>> "/home/hilvertg/tetterst/.scipion3env/lib/python3.5/site-packages/scipion/install/plugin_funcs.py",
>> line 166, in installBin
>>     environment.execute()
>>   File
>> "/home/hilvertg/tetterst/.scipion3env/lib/python3.5/site-packages/scipion/install/funcs.py",
>> line 748, in execute
>>     self._executeTargets(targetList)
>>   File
>> "/home/hilvertg/tetterst/.scipion3env/lib/python3.5/site-packages/scipion/install/funcs.py",
>> line 690, in _executeTargets
>>     tgt.execute()
>>   File
>> "/home/hilvertg/tetterst/.scipion3env/lib/python3.5/site-packages/scipion/install/funcs.py",
>> line 220, in execute
>>     command.execute()
>>   File
>> "/home/hilvertg/tetterst/.scipion3env/lib/python3.5/site-packages/scipion/install/funcs.py",
>> line 161, in execute
>>     "running '%s')" % (t, cmd))
>> AssertionError: target
>> '/home/hilvertg/tetterst/software/em/xmipp/bin/xmipp_reconstruct_significant'
>> not built (after running 'cd . && ./xmipp config noAsk && ./xmipp
>> check_config && ./xmipp compileAndInstall N=4 && ln -srfn build
>> /home/hilvertg/tetterst/software/em/xmipp && cd - && touch
>> installation_finished && rm bindings_linked 2> /dev/null')
>> Error at main: target
>> '/home/hilvertg/tetterst/software/em/xmipp/bin/xmipp_reconstruct_significant'
>> not built (after running 'cd . && ./xmipp config noAsk && ./xmipp
>> check_config && ./xmipp compileAndInstall N=4 && ln -srfn build
>> /home/hilvertg/tetterst/software/em/xmipp && cd - && touch
>> installation_finished && rm bindings_linked 2> /dev/null')
>>
>> Something went wrong running:
>>  cd /home/hilvertg/tetterst &&
>> /usr/bin/python3 -m virtualenv --python=python3 .scipion3env &&
>> . /home/hilvertg/tetterst/.scipion3env/bin/activate &&
>> cd /home/hilvertg/tetterst &&
>> mkdir -p software/lib &&
>> mkdir -p software/bindings &&
>> mkdir -p software/em &&
>> export SCIPION_HOME=/home/hilvertg/tetterst &&
>> pip install scipion-pyworkflow &&
>> pip install scipion-app &&
>> python -m scipion installp -p scipion-em-xmipp -j 4
>> Installation cancelled.
>>
>> _______________________________________________
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>> sci...@li...
>> https://lists.sourceforge.net/lists/listinfo/scipion-users
>>
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Re: [scipion-users] Installation trouble

Image processing framework to integrate EM software packages.

Re: [scipion-users] Installation trouble