Re: [scipion-users] problem installing scipion3

[Moustafa, I. M. <ri...@ps...>]

Running "scipion3 inspect localrec" gives the following error:

Scipion v3.0.5 () devel

 >>> WARNING: Image library not found!
  > Please install Xmipp to get full functionality.
(Configuration->Plugins->scipion-em-xmipp -> expand, in Scipion plugin manager window)


Plugin: localrec
   >>> constants:  loaded
   >>> convert:  loaded
   >>> protocols:  loaded
   >>> wizards:  missing
   >>> viewers:  loaded
   >>> tests:  error -> Traceback (most recent call last):
  File "/usr/local/scipion/pip/scipion/install/inspect-plugins.py", line 74, in getSubmodule
    m = importlib.import_module('%s.%s' % (name, subname))
  File "/usr/local/miniconda/envs/.scipion3env/lib/python3.8/importlib/__init__.py", line 127, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
  File "<frozen importlib._bootstrap>", line 1014, in _gcd_import
  File "<frozen importlib._bootstrap>", line 991, in _find_and_load
  File "<frozen importlib._bootstrap>", line 975, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 671, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 783, in exec_module
  File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
  File "/usr/local/scipion/pip/localrec/tests/__init__.py", line 27, in <module>
from .test_protocol_localized_reconstruction import (TestLocalizedReconsBase,
  File "/usr/local/scipion/pip/localrec/tests/test_protocol_localized_reconstruction.py", line 37, in <module>
    from xmipp3.protocols import XmippProtCreateMask3D
  File "/usr/local/scipion/pip/xmipp3/protocols/__init__.py", line 50, in <module>
    from .protocol_ctf_micrographs import XmippProtCTFMicrographs
  File "/usr/local/scipion/pip/xmipp3/protocols/protocol_ctf_micrographs.py", line 44, in <module>
    from xmipp3.base import isMdEmpty
ImportError: cannot import name 'isMdEmpty' from 'xmipp3.base' (/usr/local/scipion/pip/xmipp3/base.py)

Ibrahim
________________________________
From: Pablo Conesa <pc...@cn...>
Sent: Wednesday, October 28, 2020 2:23 AM
To: sci...@li... <sci...@li...>
Subject: Re: [scipion-users] problem installing scipion3


Despite the error, it seems localrec is installed.

What about:

./scipion3 inspect localrec


On 27/10/20 19:12, Moustafa, Ibrahim M. wrote:
scipion-em-localrec 3.0.1
--
Pablo Conesa - Madrid Scipion<https://nam01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fscipion.i2pc.es%2F&data=04%7C01%7Cria2%40psu.edu%7Cbf532e8ce14541a85e1908d87b0a12e4%7C7cf48d453ddb4389a9c1c115526eb52e%7C0%7C1%7C637394630482954098%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C2000&sdata=W46ErzeEGkYXk8Ma7SO5lbA6cfarjSIk9uFY08lcJy8%3D&reserved=0> team