[scipion-users] scipion3 deepemhancer model error

[Lugmayr, W. <w.l...@uk...>]

hi,

when i try the xmipp - deepemhancer protocol in scipion 3.0.5-devel i get the following error when pressing the execute button:
Pre-trained model(s) not found: deepEMhancer
Please, run 'scipion installb deepLearningToolkit' or install the scipion-em-xmipp > deepLearningToolkit package using the plugin manager.

the deepLearningToolkit is installed and the conda is there too:
                         /beegfs/cssb/software/em/scipion/3.0/anaconda3
                         /beegfs/cssb/software/em/scipion/3.0/anaconda3/envs/.scipion3env
                         /beegfs/cssb/software/em/scipion/3.0/anaconda3/envs/3DFSC
                         /beegfs/cssb/software/em/scipion/3.0/anaconda3/envs/cryolo-1.7.2
                         /beegfs/cssb/software/em/scipion/3.0/anaconda3/envs/cryoloCPU-1.7.2
                         /beegfs/cssb/software/em/scipion/3.0/anaconda3/envs/topaz-0.2.3
                         /beegfs/cssb/software/em/scipion/3.0/anaconda3/envs/xmipp_DLTK_v0.3
                         /beegfs/cssb/software/em/scipion/3.0/anaconda3/envs/xmipp_MicCleaner
                         /beegfs/cssb/software/em/scipion/3.0/anaconda3/envs/xmipp_deepEMhancer
                         /beegfs/cssb/software/em/scipion/3.0/devel/software/em/eman-2.31

$ ls /beegfs/cssb/software/em/scipion/3.0/devel/software/em/deepLearningToolkit 
models_UPDATED_on_14_10_2020  xmipp_deepEMhancer.yml  xmipp_DLTK_v0.3.yml  xmipp_MicCleaner.yml

my other conda with deepemhancer runs fine with the default model location in:
$ ls /home/lugmayr/.local/share/deepEMhancerModels/production_checkpoints 
deepEMhancer_highRes.hd5  deepEMhancer_masked.hd5  deepEMhancer_tightTarget.hd5  deepEMhancer_wideTarget.hd5  versions.txt

finding these files in the scipion tree gives no result.

where should the files be in the scipion directory tree?

cheers,
wolfgang


-- 
Universitätsklinikum Hamburg-Eppendorf (UKE)
@ Centre for Structral Systems Biology (CSSB)
@ Deutsches Elektronen-Synchrotron (DESY)
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22607 Hamburg, Germany
Tel.: +49 40 8998-87652
Email: wol...@cs...
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