Re: [scipion-users] problem installing scipion3

[<pc...@cn...>]

<div dir='auto'><div>Hi, I'm sorry about you poor experience installing the plugin<div dir="auto"><br></div><div dir="auto">Can you try:</div><div dir="auto"><br></div><div dir="auto">scipion3 python -m pip uninstall scipion-em-localrec</div><div dir="auto"><br></div><div dir="auto">And then:</div><div dir="auto"><br></div><div dir="auto">scipion3 installs -p scipion-em-localrec</div><br><div class="gmail_extra" dir="auto">?</div><div class="gmail_extra" dir="auto">Then we can also check what is wrong with bumpy.</div><div class="gmail_extra" dir="auto"><br></div><div class="gmail_extra" dir="auto">All the best, Pablo.</div><div class="gmail_extra"><br><div class="gmail_quote">El 24 oct. 2020 2:12, "Moustafa, Ibrahim M." &lt;ri...@ps...&gt; escribió:<br type="attribution"><blockquote class="quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">
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Dear All,</div>
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&nbsp; We are having so much trouble installing Scipion 3. We thought it went through installation but then it complained about xmipp because of conflict between numpy-1.19.1 (installed with OpenCV) and numpy-1.18.4 (installed from pip). None of the plugins seem
 to be properly installed when we tried, although it showed "Successfully Finished' in the log!</div>
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Trying to install localrec-em showed the following error:</div>
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&gt;scipion3 installp -p scipion-em-localrec</div>
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/usr/local/miniconda/envs/.scipion3env/bin/python -m pip install scipion-em-localrec==3.0.1
<div>Collecting scipion-em-localrec==3.0.1</div>
<div>&nbsp; Using cached scipion_em_localrec-3.0.1-py3-none-any.whl (530 kB)</div>
<div>Installing collected packages: scipion-em-localrec</div>
<div>Successfully installed scipion-em-localrec-3.0.1</div>
<div>WARNING: Target directory /usr/local/scipion/pip/scipion_em_localrec-3.0.1.dist-info already exists. Specify --upgrade to force replacement.</div>
<div>WARNING: Target directory /usr/local/scipion/pip/localrec already exists. Specify --upgrade to force replacement.</div>
<div>Traceback (most recent call last):</div>
<div>&nbsp; File "/usr/local/scipion/pip/scipion/__main__.py", line 453, in &lt;module&gt;</div>
<div>&nbsp; &nbsp; main()</div>
<div>&nbsp; File "/usr/local/scipion/pip/scipion/__main__.py", line 296, in main</div>
<div>&nbsp; &nbsp; installPluginMethods()</div>
<div>&nbsp; File "/usr/local/scipion/pip/scipion/install/install_plugin.py", line 229, in installPluginMethods</div>
<div>&nbsp; &nbsp; installed = plugin.installPipModule(version=pluginVersion)</div>
<div>&nbsp; File "/usr/local/scipion/pip/scipion/install/plugin_funcs.py", line 152, in installPipModule</div>
<div>&nbsp; &nbsp; environment.execute()</div>
<div>&nbsp; File "/usr/local/scipion/pip/scipion/install/funcs.py", line 748, in execute</div>
<div>&nbsp; &nbsp; self._executeTargets(targetList)</div>
<div>&nbsp; File "/usr/local/scipion/pip/scipion/install/funcs.py", line 690, in _executeTargets</div>
<div>&nbsp; &nbsp; tgt.execute()</div>
<div>&nbsp; File "/usr/local/scipion/pip/scipion/install/funcs.py", line 220, in execute</div>
<div>&nbsp; &nbsp; command.execute()</div>
<div>&nbsp; File "/usr/local/scipion/pip/scipion/install/funcs.py", line 160, in execute</div>
<div>&nbsp; &nbsp; assert glob(t), ("target '%s' not built (after "</div>
<div>AssertionError: target '/usr/local/miniconda/envs/.scipion3env/lib/python3.8/site-packages/scipion_em_localrec*' not built (after running '/usr/local/miniconda/envs/.scipion3env/bin/python -m pip install scipion-em-localrec==3.0.1')</div>
Error at main: target '/usr/local/miniconda/envs/.scipion3env/lib/python3.8/site-packages/scipion_em_localrec*' not built (after running '/usr/local/miniconda/envs/.scipion3env/bin/python -m pip install scipion-em-localrec==3.0.1')<br>
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&nbsp; &nbsp; Not sure what we are doing wrong! It would be appreciated if someone can share a "clear" protocol of how to properly install Scipion 3 along with plugins. We are mostly interested in&nbsp;</div>
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localrec plugin.</div>
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P.S. we are using py3.8 from miniconda</div>
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&nbsp; &nbsp;Appreciate your help,</div>
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&nbsp; &nbsp; &nbsp; Ibrahim</div>
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<span style="font-family:'comic sans ms' , 'chalkboard' , cursive">Ibrahim M.Moustafa, Ph.D.</span><br>
<span style="font-family:'comic sans ms' , 'chalkboard' , cursive">Pennsylvania State University</span><br>
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<span style="font-family:'comic sans ms' , 'chalkboard' , cursive">Biochemistry &amp; Molecular Biology Dept.</span></div>
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<span style="font-family:'comic sans ms' , 'chalkboard' , cursive">Millennium Science Complex&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp;</span><br>
<span style="font-family:'comic sans ms' , 'chalkboard' , cursive">University Park</span><br>
<span style="font-family:'comic sans ms' , 'chalkboard' , cursive">State College, PA16802</span><br>
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<span style="font-family:'comic sans ms' , 'chalkboard' , cursive">Phone: (814) 863 5940</span><br>
<span style="font-family:'comic sans ms' , 'chalkboard' , cursive">Fax:&nbsp; &nbsp; &nbsp; (814) 865 7927</span></div>
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