[scipion-users] Java failed

[Dmitry S. <Sem...@gm...>]

One more small question — 


I have 5 000 000 particles and java fails while opening the result of relion 2D.

Any idea how to get the classes/particles that I want?

Thank you!


Sincerely,
Dmitry


ERROR loading project: scratch
Project database not found at '/home/user/Data/ScipionUserData/projects/scratch/project.sqlite'

java -Xmx2g -d64 -Djava.library.path=/usr/local/scipion/software/em/xmipp/lib -Dplugins.dir=/usr/local/scipion/software/em/xmipp/bindings/java/imagej/plugins -cp /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.242.b08-0.el7_7.x86_64/lib/*:/usr/local/scipion/software/em/xmipp/bindings/java/imagej/*:/usr/local/scipion/software/em/xmipp/bindings/java/lib/* xmipp.viewer.scipion.ScipionViewer -i "Runs/001802_ProtRelionClassify2D/classes2D.sqlite" --render _representative._filename --labels id _size --zoom 152 --visible enabled id _size _representative._filename _rlnclassDistribution _rlnAccuracyRotations _rlnAccuracyTranslations --sortby _size desc --order enabled id _size _representative._filename _rlnclassDistribution _rlnAccuracyRotations _rlnAccuracyTranslations --scipion 57898 1802 1712
Exception in thread "main" java.lang.OutOfMemoryError: Java heap space
	at java.util.Arrays.copyOfRange(Arrays.java:3664)
	at java.lang.String.<init>(String.java:207)
	at java.lang.String.toUpperCase(String.java:2810)
	at java.lang.String.toUpperCase(String.java:2833)
	at org.sqlite.RS.findColumn(RS.java:163)
	at org.sqlite.RS.getInt(RS.java:527)
	at xmipp.viewer.scipion.ScipionMetaData.loadValues(ScipionMetaData.java:207)
	at xmipp.viewer.scipion.ScipionMetaData.loadData(ScipionMetaData.java:151)
	at xmipp.viewer.scipion.ScipionMetaData.<init>(ScipionMetaData.java:91)
	at xmipp.viewer.scipion.ScipionMetaData.<init>(ScipionMetaData.java:68)
	at xmipp.viewer.windows.ImagesWindowFactory.openScipionMetadata(ImagesWindowFactory.java:223)
	at xmipp.viewer.scipion.ScipionViewer.openFile(ScipionViewer.java:71)
	at xmipp.viewer.scipion.ScipionViewer.main(ScipionViewer.java:52)