[scipion-users] scipion3 - relion protocol viewer - chimerax script problem

[Lugmayr, W. <w.l...@uk...>]

hi,

i run relion class3d and run into the following problem when looking at the volume that the chimerax cxc script only contains the word "tile":

$ cat Runs/003565_ProtRelionClassify3D/tmp/chimera_angular_distribution.cxc
open /beegfs/cssb/user/lugmayr/TestSets/Scipion3_TestSuite/Runs/003565_ProtRelionClassify3D/tmp/axis.bild
open /beegfs/cssb/user/lugmayr/TestSets/Scipion3_TestSuite/Runs/003565_ProtRelionClassify3D/tmp/spheres.bild
cofr 0,0,0
open /beegfs/cssb/user/lugmayr/TestSets/Scipion3_TestSuite/Runs/003565_ProtRelionClassify3D/extra/relion_it025_class001.mrc
volume #3 voxelSize 0.87
volume #3 origin -104.4,-104.4,-104.4

$ cat Runs/003565_ProtRelionClassify3D/extra/chimera_volumes.cxc
tile

settings used:
3D classes to visualize: -> selection -> Classes used: 1
Display volume with: chimera

pressing the eye button calls:
ChimeraX Runs/003565_ProtRelionClassify3D/extra/chimera_volumes.cxc 
with no other arguments so i assume the open statements are overwritten

the same behaviour is also when looking at the initial model, so i assume its the same code statement.

cheers,
wolfgang

p.s. fyi: i am working on a virtual desktop on the cluster, so i had to replace ChimeraX by a script
vglrun +xcb /.../ChimeraX.orig $*
to overcome the usual ChimeraX problem:
WARNING: WebEngineContext? used before QtWebEngine::initialize() or OpenGL context creation failed.
ERROR: Could not create OpenGL context


-- 
Universitätsklinikum Hamburg-Eppendorf (UKE)
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