[scipion-users] scipion-em-xmipp 20.7rc1 update failure

[Lugmayr, W. <w.l...@uk...>]

Hi,

I have a problem with xmipp_cuda_movie_alignment_correlation dying with Signal 6 and before posting I tried to update xmipp yesterday.

I updated xmipp via the plugin manager (together with the scipion-em-tomo package).
Now i get the error message below.

Starting "scipion3 last" prints the following:_

$ scipion3
Scipion v3.0.3 () devel

 >>> WARNING: Image library not found!
  > Please install Xmipp to get full functionality. 
(Configuration->Plugins->scipion-em-xmipp -> expand, in Scipion plugin manager window)


 > error when importing from xmipp3.protocols: cannot import name 'isMdEmpty' from 'xmipp3.base' (/beegfs/cssb/software/em/scipion/3.0/anaconda3/envs/.scipion3env/lib/python3.8/site-packages/xmipp3/base.py)
   File "/beegfs/cssb/software/em/scipion/3.0/anaconda3/envs/.scipion3env/lib/python3.8/site-packages/xmipp3/protocols/protocol_ctf_micrographs.py", line 44, in <module>
   Check the plugin manager (Configuration->Plugins in Scipion manager window) 
   or use 'scipion installp --help --checkUpdates' in the command line to check for upgrades,
   it could be a versions compatibility issue.

Here are the xmipp infos:
scipion-em-tomo                3.0.6      [X]
scipion-em-xmipp               20.7rc1    [X]
scipion-em-xmipp2              3.0.0      [X]

I think the hint should be now:
scipion3 installp --help --checkUpdates

Cheers,
Wolfgang


-- 
Universitätsklinikum Hamburg-Eppendorf (UKE)
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