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Re: [scipion-users] Analyze result not working
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From: Pablo C. <pc...@cn...> - 2020-09-30 07:44:11
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Thanks Khaja, All seems right providing you are on a centOS "like" machine. Is there anything printed in the console, any error message? when yo click on de "Analyze result" button? Could you please send the output of: ./scipion python -m pip list All the best, Pablo. On 30/9/20 7:01, khaja faisal tarique wrote: > Dear Pablo > > I checked it. > > Following are the binaries: > > Do you see anything missing here ? Is there anything wrong here ? > > Another question: What is the most stable version of the Scipion > available?. I could see Scipion 3.0 is also released. > > Scipion v2.0 (2019-04-23) Diocletian > > >>>>> python > /apps/SCIPION/scipion/pyworkflow/install/install-plugin.py > /apps/SCIPION/scipion/scipion installb > /apps/SCIPION/scipion/software/lib/python2.7/importlib/__init__.py:37: > CryptographyDeprecationWarning: Python 2 is no longer supported by the > Python core team. Support for it is now deprecated in cryptography, > and will be removed in a future release. > __import__(name) > Using TensorFlow backend. > WARNING!!: CONDA_ACTIVATION_CMD variable not defined. Relying on conda > being in the PATH > WARNING!!: CONDA_ACTIVATION_CMD variable not defined. Relying on conda > being in the PATH > WARNING!!: CONDA_ACTIVATION_CMD variable not defined. Relying on conda > being in the PATH > usage: /apps/SCIPION/scipion/scipion installb [-h] binName1 > binName2-1.2.3 binName3 ... > > positional arguments: > binName(s) The name(s) of the bins we want install, optionally with > version in the form name-version. If no version is > specified, > will install the last one. > > optional arguments: > -h, --help show help > -j j Number of CPUs to use for compilation > > Example: /apps/SCIPION/scipion/scipion installb ctffind4 unblur-1.0.15 > > Available binaries: ([ ] not installed, [X] seems already installed) > bsoft 1.8.8 [ ] 1.9.0 [X] > chimera 1.13.1 [ ] > cryoEF 1.1.0 [X] > cryolo 1.6.1 [ ] > cryolo_model 202002_N63 [X] 201910 [ ] > cryolo_negstain_model 20190226 [ ] > ctffind 3.6 [X] > ctffind4 4.0.15 [ ] 4.1.5 [ ] 4.1.8 [ ] 4.1.10 [X] > 4.1.13 [X] > deepLearningToolkit 0.1 [ ] > dogpicker 0.2.1.1 [X] > eman 2.21 [ ] 2.3 [X] > frealign 9.07 [X] > gctf 1.06 [ ] 1.18 [X] > janni_model 20190703 [X] > locscale 0.1 [X] > mag_distortion 1.0.1 [X] > maxit 10.1 [ ] > motioncor2 1.2.3 [ ] 1.2.6 [ ] 1.3.0 [X] > nma 1.2 [ ] 2.0 [X] > nysbc3DFSC 2.5 [X] 3.0 [ ] > powerfit 2.0 [ ] > relion 1.4 [ ] 1.4f [ ] 2.0 [ ] 2.1 [ ] > 3.0 [X] > resmap 1.95 [X] > simple 2.1 [X] > spider 25.02 [X] > summovie 1.0.2 [X] > topaz 0.2.1 [X] > unblur 1.0.15 [ ] 1.0.2 [X] > xmippBin_Centos 3.19.04 [X] > xmippBin_Debian 3.19.04 [ ] > > On Tue, Sep 29, 2020 at 5:23 PM Pablo Conesa <pc...@cn... > <mailto:pc...@cn...>> wrote: > > Hi, is this Scipion2? > > If so, have you installed xmipp plugin? > > To now that try: > > ./scipion installb > > you should see xmipp binaries listed. > > On 29/9/20 13:23, khaja faisal tarique wrote: >> Hello everyone >> >> I just installed the scipion software and while running it I am >> noticing that the Analyze Results (red eye) is not working. The >> window is not popping up to select the micrographs after ctf >> correction or for manual picking. Any idea what is wrong with this? >> >> -- >> Faisal Tarique Khaja >> Research Associate >> Indian Institute of Science >> Bangalore, India >> >> >> _______________________________________________ >> scipion-users mailing list >> sci...@li... <mailto:sci...@li...> >> https://lists.sourceforge.net/lists/listinfo/scipion-users > -- > Pablo Conesa - *Madrid Scipion <http://scipion.i2pc.es> team* > _______________________________________________ > scipion-users mailing list > sci...@li... > <mailto:sci...@li...> > https://lists.sourceforge.net/lists/listinfo/scipion-users > > > > -- > Faisal Tarique Khaja > Research Associate > Indian Institute of Science > Bangalore, India > > > _______________________________________________ > scipion-users mailing list > sci...@li... > https://lists.sourceforge.net/lists/listinfo/scipion-users -- Pablo Conesa - *Madrid Scipion <http://scipion.i2pc.es> team* |
