Re: [scipion-users] Analyze result not working

[khaja f. t. <kha...@gm...>]

Dear Pablo

I checked it.

Following are the binaries:

Do you see anything missing here ? Is there anything wrong here ?

Another question: What is the most stable version of the Scipion
available?. I could see Scipion 3.0 is also released.

Scipion v2.0 (2019-04-23) Diocletian

>>>>> python  /apps/SCIPION/scipion/pyworkflow/install/install-plugin.py
/apps/SCIPION/scipion/scipion installb
/apps/SCIPION/scipion/software/lib/python2.7/importlib/__init__.py:37:
CryptographyDeprecationWarning: Python 2 is no longer supported by the
Python core team. Support for it is now deprecated in cryptography, and
will be removed in a future release.
  __import__(name)
Using TensorFlow backend.
WARNING!!: CONDA_ACTIVATION_CMD variable not defined. Relying on conda
being in the PATH
WARNING!!: CONDA_ACTIVATION_CMD variable not defined. Relying on conda
being in the PATH
WARNING!!: CONDA_ACTIVATION_CMD variable not defined. Relying on conda
being in the PATH
usage: /apps/SCIPION/scipion/scipion installb  [-h] binName1 binName2-1.2.3
binName3 ...

positional arguments:
  binName(s)  The name(s) of the bins we want install, optionally with
              version in the form name-version. If no version is specified,
              will install the last one.

optional arguments:
  -h, --help  show help
  -j j        Number of CPUs to use for compilation

Example: /apps/SCIPION/scipion/scipion installb ctffind4 unblur-1.0.15

Available binaries: ([ ] not installed, [X] seems already installed)
         bsoft     1.8.8 [ ]    1.9.0 [X]
       chimera    1.13.1 [ ]
        cryoEF     1.1.0 [X]
        cryolo     1.6.1 [ ]
  cryolo_model 202002_N63 [X]   201910 [ ]
cryolo_negstain_model  20190226 [ ]
       ctffind       3.6 [X]
      ctffind4    4.0.15 [ ]    4.1.5 [ ]    4.1.8 [ ]   4.1.10 [X]
4.1.13 [X]
deepLearningToolkit       0.1 [ ]
     dogpicker   0.2.1.1 [X]
          eman      2.21 [ ]      2.3 [X]
      frealign      9.07 [X]
          gctf      1.06 [ ]     1.18 [X]
   janni_model  20190703 [X]
      locscale       0.1 [X]
mag_distortion     1.0.1 [X]
         maxit      10.1 [ ]
    motioncor2     1.2.3 [ ]    1.2.6 [ ]    1.3.0 [X]
           nma       1.2 [ ]      2.0 [X]
    nysbc3DFSC       2.5 [X]      3.0 [ ]
      powerfit       2.0 [ ]
        relion       1.4 [ ]     1.4f [ ]      2.0 [ ]      2.1 [ ]
 3.0 [X]
        resmap      1.95 [X]
        simple       2.1 [X]
        spider     25.02 [X]
      summovie     1.0.2 [X]
         topaz     0.2.1 [X]
        unblur    1.0.15 [ ]    1.0.2 [X]
xmippBin_Centos   3.19.04 [X]
xmippBin_Debian   3.19.04 [ ]

On Tue, Sep 29, 2020 at 5:23 PM Pablo Conesa <pc...@cn...> wrote:

> Hi, is this Scipion2?
>
> If so, have you installed xmipp plugin?
>
> To now that try:
>
> ./scipion installb
>
> you should see xmipp binaries listed.
> On 29/9/20 13:23, khaja faisal tarique wrote:
>
> Hello everyone
>
> I just installed the scipion software and while running it I am noticing
> that the Analyze Results (red eye) is not working. The window is not
> popping up to select the micrographs after ctf correction or for manual
> picking. Any idea what is wrong with this?
>
> --
> Faisal Tarique Khaja
> Research Associate
> Indian Institute of Science
> Bangalore, India
>
>
> _______________________________________________
> scipion-users mailing lis...@li...https://lists.sourceforge.net/lists/listinfo/scipion-users
>
> --
> Pablo Conesa - *Madrid Scipion <http://scipion.i2pc.es> team*
> _______________________________________________
> scipion-users mailing list
> sci...@li...
> https://lists.sourceforge.net/lists/listinfo/scipion-users
>


-- 
Faisal Tarique Khaja
Research Associate
Indian Institute of Science
Bangalore, India