Re: [scipion-users] Import particles "error"

[Jose M. de la R. T. <del...@gm...>]

Dear Karim,

Are you using Scipion in local workstations on the HP2C cluster?
I have contacted their stuff to start testing Scipion 3 as soon as possible.

Best Regards,
Jose Miguel



On Wed, Jul 15, 2020 at 9:54 PM Karim Rafie <kar...@um...> wrote:

> Hi Grigory,
>
>
>
> Great, thanks for the update.
>
>
>
> Cheers,
>
> Karim
>
> ##############################################
>
> Karim Rafie; PhD, AMRSC
>
> Olle Engkvist Postdoctoral Research Fellow
>
> Carlson Lab
>
> Department of Medical Biochemistry and Biophysics
>
> Umeå University
>
> Umeå, Sweden
>
> [image: associate-member-amrsc-of-the-royal-society-of-chemistry]
>
>
>
> *From:* Grigory Sharov <sha...@gm...>
> *Sent:* 15 July 2020 21:51
> *To:* Mailing list for Scipion users <sci...@li...>
> *Subject:* Re: [scipion-users] Import particles "error"
>
>
>
> Hi Karim,
>
>
>
> I'm afraid Scipion 2.0 and relion plugin for it do not support relion 3.1.
> Scipion 3.0 which will be beta-released soon will have relion 3.1 support.
>
>
> Best regards,
> Grigory
>
>
>
>
> --------------------------------------------------------------------------------
>
> Grigory Sharov, Ph.D.
>
> MRC Laboratory of Molecular Biology,
> Francis Crick Avenue,
> Cambridge Biomedical Campus,
> Cambridge CB2 0QH, UK.
> tel. +44 (0) 1223 267228 <+44%201223%20267228>
>
> e-mail: gs...@mr...
>
>
>
>
>
> On Wed, Jul 15, 2020 at 8:07 PM Karim Rafie <kar...@um...> wrote:
>
> Hi all,
>
>
>
> I'm encountering a curious "error" in scipion v2.0. I am trying to import
> particles from a relion 3.1 star file and whenever I hit execute a window
> pops up telling me an integer is required. However, it doesn't say where
> and all fields have a correct integer/float.
>
> I reinstalled scipion and now get an error message saying:
>
> *'NoneType' object has no attribute 'read'*
>
>
>
> I am guessing it has something to do with the new file format of relion
> 3.1 star files.
>
>
>
> Does anyone have a "fix" or an idea what the issue is?
>
>
>
> Any help is greatly appreciated.
>
>
>
> Cheers,
>
> Karim
>
> ##############################################
>
> Karim Rafie; PhD, AMRSC
>
> Postdoctoral Research Fellow
>
> Carlson Lab
>
> Department of Medical Biochemistry and Biophysics
>
> Umeå University
>
> Umeå / Sweden
>
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