Re: [scipion-users] [scipion] micelles density subtraction

[Carlos O. S. <co...@cn...>]

I think the only dependence is eman, and it may not even be so, now.

On 7/8/20 2:40 PM, Dmitry A. Semchonok wrote:
> Dear Carlos Oscar and all,
>
>
>
> So for the localrec I will need the cryosparc to be installed on my 
> system additionally to the SCIPION, right?
>
> If so, are there any recommendations from SCIPION point of view how to 
> install the cryosparc on CentOS 7?
>
> Thank you!
>
> Sincerely,
> Dmitry
>
>
> ------ Original Message ------
> From: "Carlos Oscar Sorzano" <co...@cn... <mailto:co...@cn...>>
> To: "Dmitry A. Semchonok" <sem...@gm... 
> <mailto:sem...@gm...>>; "sci...@li... 
> <mailto:sci...@li...>" 
> <sci...@li... 
> <mailto:sci...@li...>>; "sc...@cn... 
> <mailto:sc...@cn...>" <sc...@cn... 
> <mailto:sc...@cn...>>
> Sent: 08-Jul-20 2:33:18 PM
> Subject: Re: [scipion] micelles density subtraction
>
>> Hi Dmitry,
>>
>> my experience with the standard tools in Scipion to subtract the 
>> membrane was not good (not for Scipion, but for the tools 
>> underneath). The one I did not try was localrec, that may be able to 
>> help and recently they announced an update of the plugin. We are 
>> working on our own subtraction, but it is still not ready.
>>
>> Cheers, Carlos Oscar
>>
>> On 7/7/20 9:54 PM, Dmitry A. Semchonok wrote:
>>> Dear colleagues,
>>>
>>> I would like to ask how to subtract the micelles density around your 
>>> membrane protein in the proper way?
>>>
>>> What are the steps?
>>>
>>> Thank you!
>>>
>>> Sincerely,
>>> Dmitry
>>>
>>>