Re: [scipion-users] xmipp3-ctf concensus failed

[Pablo C. <pc...@cn...>]

Dear Dmitry.....how are ctf inputs....is the estimation correct or have 
some failed. Explore the values visually.

On 23/6/20 0:29, Dmitry A. Semchonok wrote:
> Dear colleagues,
>
> I would like to run xmipp3-ctf concensus but I got the following error.
>
> Could you please help?
>
> thank you!
>
> Sincerely,
> Dmitry
>
> File 'Runs/010692_XmippProtCTFConsensus/logs/run.stdout' doesn't 
> existFile 'Runs/010692_XmippProtCTFConsensus/logs/run.stdout' doesn't 
> exist00001:   RUNNING PROTOCOL -----------------
> 00002:        HostName: dataanalysisserver1
> 00003:             PID: 38890
> 00004:         Scipion: v2.0 (2019-04-23) Diocletian
> 00005:      currentDir: 
> /home/user/Data/ScipionUserData/projects/Colette__03_06__20
> 00006:      workingDir: Runs/010692_XmippProtCTFConsensus
> 00007:         runMode: Restart
> 00008:             MPI: 1
> 00009:         threads: 1
> 00010:    Starting at step: 1
> 00011:    Running steps
> 00012:   STARTED: _computeCTFDiscrepancy, step 1
> 00013:     2020-06-23 00:25:58.360157
> 00014:   float() argument must be a string or a number
> 00015:   Problems found converting metadata:
> 00016:   Label id = 132
> 00017:   Attribute = _fitQuality
> 00018:   Value = None
> 00019:   Value type = <type 'float'>
> 00020:   Traceback (most recent call last):
> 00021:     File "/usr/local/scipion/pyworkflow/protocol/protocol.py", 
> line 186, in run
> 00022:       self._run()
> 00023:     File "/usr/local/scipion/pyworkflow/protocol/protocol.py", 
> line 237, in _run
> 00024:       resultFiles = self._runFunc()
> 00025:     File "/usr/local/scipion/pyworkflow/protocol/protocol.py", 
> line 233, in _runFunc
> 00026:       return self._func(*self._args)
> 00027:     File 
> "/usr/local/scipion/software/lib/python2.7/site-packages/xmipp3/protocols/protocol_ctf_consensus.py", 
> line 504, in _computeCTFDiscrepancy
> 00028:       self._ctfToMd(ctf1, md1)
> 00029:     File 
> "/usr/local/scipion/software/lib/python2.7/site-packages/xmipp3/protocols/protocol_ctf_consensus.py", 
> line 482, in _ctfToMd
> 00030:       xmipp3.convert.ctfModelToRow(ctf, ctfRow)
> 00031:     File 
> "/usr/local/scipion/software/lib/python2.7/site-packages/xmipp3/convert/convert.py", 
> line 635, in ctfModelToRow
> 00032:       extraLabels=CTF_EXTRA_LABELS)
> 00033:     File 
> "/usr/local/scipion/software/lib/python2.7/site-packages/xmipp3/convert/convert.py", 
> line 252, in objectToRow
> 00034:       raise e
> 00035:   TypeError: float() argument must be a string or a number
> 00036:   Protocol failed: float() argument must be a string or a number
> 00037:   FAILED: _computeCTFDiscrepancy, step 1
> 00038:     2020-06-23 00:26:16.638520
> 00039:   *** Last status is failed
> 00040:   ------------------- PROTOCOL FAILED (DONE 1/1815)
> NameError: name 'sys' is not defined
>
> ========================================
>
>
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-- 
Pablo Conesa - *Madrid Scipion <http://scipion.i2pc.es> team*