[scipion-users] xmipp3-ctf concensus failed

[Dmitry A. S. <sem...@gm...>]

Dear colleagues,

I would like to run xmipp3-ctf concensus but I got the following error.

Could you please help?

thank you!

Sincerely,
Dmitry

File 'Runs/010692_XmippProtCTFConsensus/logs/run.stdout' doesn't 
existFile 'Runs/010692_XmippProtCTFConsensus/logs/run.stdout' doesn't 
exist00001:   RUNNING PROTOCOL -----------------
00002:        HostName: dataanalysisserver1
00003:             PID: 38890
00004:         Scipion: v2.0 (2019-04-23) Diocletian
00005:      currentDir: 
/home/user/Data/ScipionUserData/projects/Colette__03_06__20
00006:      workingDir: Runs/010692_XmippProtCTFConsensus
00007:         runMode: Restart
00008:             MPI: 1
00009:         threads: 1
00010:    Starting at step: 1
00011:    Running steps
00012:   STARTED: _computeCTFDiscrepancy, step 1
00013:     2020-06-23 00:25:58.360157
00014:   float() argument must be a string or a number
00015:   Problems found converting metadata:
00016:   Label id = 132
00017:   Attribute = _fitQuality
00018:   Value = None
00019:   Value type = <type 'float'>
00020:   Traceback (most recent call last):
00021:     File "/usr/local/scipion/pyworkflow/protocol/protocol.py", 
line 186, in run
00022:       self._run()
00023:     File "/usr/local/scipion/pyworkflow/protocol/protocol.py", 
line 237, in _run
00024:       resultFiles = self._runFunc()
00025:     File "/usr/local/scipion/pyworkflow/protocol/protocol.py", 
line 233, in _runFunc
00026:       return self._func(*self._args)
00027:     File 
"/usr/local/scipion/software/lib/python2.7/site-packages/xmipp3/protocols/protocol_ctf_consensus.py", 
line 504, in _computeCTFDiscrepancy
00028:       self._ctfToMd(ctf1, md1)
00029:     File 
"/usr/local/scipion/software/lib/python2.7/site-packages/xmipp3/protocols/protocol_ctf_consensus.py", 
line 482, in _ctfToMd
00030:       xmipp3.convert.ctfModelToRow(ctf, ctfRow)
00031:     File 
"/usr/local/scipion/software/lib/python2.7/site-packages/xmipp3/convert/convert.py", 
line 635, in ctfModelToRow
00032:       extraLabels=CTF_EXTRA_LABELS)
00033:     File 
"/usr/local/scipion/software/lib/python2.7/site-packages/xmipp3/convert/convert.py", 
line 252, in objectToRow
00034:       raise e
00035:   TypeError: float() argument must be a string or a number
00036:   Protocol failed: float() argument must be a string or a number
00037:   FAILED: _computeCTFDiscrepancy, step 1
00038:     2020-06-23 00:26:16.638520
00039:   *** Last status is failed
00040:   ------------------- PROTOCOL FAILED (DONE 1/1815)
NameError: name 'sys' is not defined

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