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Re: [scipion-users] Sphire plugin installation & running
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From: <pc...@cn...> - 2020-06-11 05:01:56
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<div dir='auto'><div dir="auto">Could you please resend files with the errors <div dir="auto"><br></div><div dir="auto"><br></div></div><div><br><div class="elided-text">El 9 jun. 2020 16:24, Grigory Sharov <sha...@gm...> escribió:<br type="attribution"><blockquote style="margin:0 0 0 0.8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Hi Dmitry,<div><br></div><div>Though I am not the maintainer of the sphire plugin and unfortunately I don't have scipion 2.0 at the moment, I couldn't reproduce this with the newer release of cryolo / scipion 3. Installation error you have can be ignored afaik, since you cant fix it without updating the cryolo binary. The run error you have says missing config.json file. Can you check if this file is missing in the extra folder of the protocol run? </div><div><br clear="all"><div><div dir="ltr" data-smartmail="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div style="color:rgb( 0 , 0 , 0 )"><font face="arial, helvetica, sans-serif" size="2"><span style="font-size:10pt">Best regards,<br>Grigory</span></font></div><div style="color:rgb( 0 , 0 , 0 )"><font face="arial, helvetica, sans-serif" size="2"><span style="font-size:10pt"><br></span></font></div><div style="color:rgb( 0 , 0 , 0 )"><font face="arial, helvetica, sans-serif" size="2"><span style="font-size:10pt">--------------------------------------------------------------------------------</span></font></div><div style="color:rgb( 0 , 0 , 0 )"><span style="font-size:12.8px">Grigory Sharov, Ph.D.</span><br style="font-size:12.8px"><br style="font-size:12.8px"><span style="font-size:12.8px">MRC Laboratory of Molecular Biology,</span><br style="font-size:12.8px"><span style="font-size:12.8px">Francis Crick Avenue,</span><br style="font-size:12.8px"><span style="font-size:12.8px">Cambridge Biomedical Campus,</span><br style="font-size:12.8px"><span style="font-size:12.8px">Cambridge CB2 0QH, UK.</span><br style="font-size:12.8px"><span style="font-size:12.8px">tel. </span><a href="tel:+44%201223%20267228" style="color:rgb( 17 , 85 , 204 );font-size:12.8px">+44 (0) 1223 267228</a></div><div style="color:rgb( 0 , 0 , 0 )"><span style="font-size:12.8px">e-mail: </span><a href="mailto:gs...@mr..." style="color:rgb( 17 , 85 , 204 );font-size:12.8px">gs...@mr...</a><br></div></div></div></div></div></div></div></div></div></div></div></div></div><br></div></div><br><div class="elided-text"><div dir="ltr">On Tue, Jun 9, 2020 at 1:35 PM Dmitry Semchonok <<a href="mailto:Sem...@gm...">Sem...@gm...</a>> wrote:<br></div><blockquote style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb( 204 , 204 , 204 );padding-left:1ex"><br> <br> <br> <br> Dear Grigory,<br> <br> We followed your suggestions to make the sphire work. <br> <br> The problem appeared to be in the initial sphire plugin installation. <br> So we decided to re-install the sphire.<br> <br> During installation we got the error - please see the files attached.<br> <br> Could you please suggest how could we fix it?<br> <br> <br> <br> <br> Thank you!<br> <br> Sincerely,<br> Dmitry<br> <br> <br> </blockquote></div> </blockquote></div><br></div></div> |
