Re: [scipion-users] Sphire plugin installation & running

[Grigory S. <sha...@gm...>]

Hi Dmitry,

Though I am not the maintainer of the sphire plugin and unfortunately I
don't have scipion 2.0 at the moment, I couldn't reproduce this with the
newer release of cryolo / scipion 3. Installation error you have can be
ignored afaik, since you cant fix it without updating the cryolo binary.
The run error you have says missing config.json file. Can you check if this
file is missing in the extra folder of the protocol run?

Best regards,
Grigory

--------------------------------------------------------------------------------
Grigory Sharov, Ph.D.

MRC Laboratory of Molecular Biology,
Francis Crick Avenue,
Cambridge Biomedical Campus,
Cambridge CB2 0QH, UK.
tel. +44 (0) 1223 267228 <+44%201223%20267228>
e-mail: gs...@mr...


On Tue, Jun 9, 2020 at 1:35 PM Dmitry Semchonok <Sem...@gm...> wrote:

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>
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> Dear Grigory,
>
> We followed your suggestions to make the sphire work.
>
> The problem appeared to be in the initial sphire plugin installation.
> So we decided to re-install the sphire.
>
> During installation we got the error - please see the files attached.
>
> Could you please suggest how could we fix it?
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>
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> Thank you!
>
> Sincerely,
> Dmitry
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>