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Re: [scipion-users] Scipion 2.0, xmipp and libs openCV and libtiff
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From: George M. <gma...@gm...> - 2020-05-19 15:47:28
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Hi Wolfgang (and David) I have tried Wolfgang's suggestions and things seem to work now (thanks Wolfgang!) , I was able to compile and run the Xmipp-optical-alignment, albeit in CPU only (the Scipion form gives the option of a GPU as well, yet my CUDA version 8.0-GA2 was not able to work with the optical alignment). CUDA works with the xmipp3 correlation alignment, not with the optical one, at least not in my system. May I also ask how one is meant to specify multiple GPUs as part of the GPU id list field. Is this possible? David: My xmipp.conf looks like this: [BUILD] CC=gcc CCFLAGS= -std=c99 CUDA=True CXX=g++ CXXFLAGS= -std=c++11 CXX_CUDA=g++ DEBUG=False INCDIRFLAGS=-I../ -I/lsc/scipion/2.0source/scipion/software/include JAR=%(JAVA_BINDIR)s/jar JAVAC=%(JAVA_BINDIR)s/javac JAVA_BINDIR=%(JAVA_HOME)s/bin JAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.252.b09-2.el7_8.x86_64 JNI_CPPPATH=%(JAVA_HOME)s/include:%(JAVA_HOME)s/include/linux LIBDIRFLAGS=-L/lsc/scipion/2.0source/scipion/software/lib LINKERFORPROGRAMS=g++ LINKFLAGS= MATLAB=False MATLAB_DIR= MPI_CC=mpicc MPI_CXX=mpiCC MPI_CXXFLAGS= MPI_LINKERFORPROGRAMS=mpiCC MPI_LINKFLAGS= NVCC=nvcc NVCC_CXXFLAGS=--x cu -D_FORCE_INLINES -Xcompiler -fPIC -Wno-deprecated-gpu-targets -ccbin %(CXX_CUDA)s -std=c++11 NVCC_LINKFLAGS=-L/lsc/nvidia/cuda/8.0-GA2/lib64 -L/lsc/nvidia/cuda/8.0-GA2/lib64/stubs OPENCV=True OPENCV3= OPENCVSUPPORTSCUDA= PYTHONINCFLAGS=-I/lsc/scipion/2.0source/scipion/software/include/python2.7 -I/lsc/scipion/2.0source/scipion/software/lib/python2.7/site-packages -I/lsc/scipion/2.0source/scipion/software/lib/python2.7/site-packages/numpy/core/include USE_DL=False VERIFIED=True The opencv built by the scipion install opencv step: [root@sekulicgpu1 scipion]# ./scipion install opencv -j 16 Scipion v2.0 (2019-04-23) Diocletian Building opencv ... wget -nv -c -O /lsc/scipion/2.0source/scipion/software/tmp/opencv-2.4.13.tgz.part http://scipion.cnb.csic.es/downloads/scipion/software/external/opencv-2.4.13.tgz 2020-05-19 16:35:54 URL: http://scipion.cnb.csic.es/downloads/scipion/software/external/opencv-2.4.13.tgz [91817825/91817825] -> "/lsc/scipion/2.0source/scipion/software/tmp/opencv-2.4.13.tgz.part" [1] mv -v /lsc/scipion/2.0source/scipion/software/tmp/opencv-2.4.13.tgz.part /lsc/scipion/2.0source/scipion/software/tmp/opencv-2.4.13.tgz ‘/lsc/scipion/2.0source/scipion/software/tmp/opencv-2.4.13.tgz.part’ -> ‘/lsc/scipion/2.0source/scipion/software/tmp/opencv-2.4.13.tgz’ cd /lsc/scipion/2.0source/scipion/software/tmp tar -xzf opencv-2.4.13.tgz cd /lsc/scipion/2.0source/scipion/software/tmp/opencv-2.4.13 cmake -DWITH_FFMPEG=OFF -DWITH_CUDA:BOOL=ON-DWITH_LIBV4L=ON-DWITH_V4L=OFF -DCMAKE_INSTALL_PREFIX:PATH=/lsc/scipion/2.0source/scipion/software . > /lsc/scipion/2.0source/scipion/software/log/opencv_cmake.log 2>&1 cd /lsc/scipion/2.0source/scipion/software/tmp/opencv-2.4.13 make -j 16 > /lsc/scipion/2.0source/scipion/software/log/opencv_make.log 2>&1 cd /lsc/scipion/2.0source/scipion/software/tmp/opencv-2.4.13 make install > /lsc/scipion/2.0source/scipion/software/log/opencv_make_install.log 2>&1 Done (6 m 57 s) ************************************************************************ * * * Congratulations, Scipion was installed successfully * * * ************************************************************************ looks like this and detected CUDA correctly: root@sekulicgpu1 xmippSrc-3.19.04]# cat /lsc/scipion/2.0source/scipion/software/log/opencv_make.log | grep -i cuda [ 26%] Building NVCC (Device) object modules/core/CMakeFiles/cuda_compile.dir/__/dynamicuda/src/cuda/./cuda_compile_generated_matrix_operations.cu.o [ 48%] [ 49%] [ 49%] [ 49%] [ 49%] [ 49%] [ 49%] [ 49%] [ 49%] [ 49%] [ 49%] [ 49%] [ 49%] Building NVCC (Device) object modules/gpu/CMakeFiles/cuda_compile.dir/src/cuda/./cuda_compile_generated_clahe.cu.o [ 49%] Building NVCC (Device) object modules/gpu/CMakeFiles/cuda_compile.dir/src/nvidia/core/./cuda_compile_generated_NCV.cu.o Building NVCC (Device) object modules/gpu/CMakeFiles/cuda_compile.dir/src/cuda/./cuda_compile_generated_row_filter.3.cu.o Building NVCC (Device) object modules/gpu/CMakeFiles/cuda_compile.dir/src/cuda/./cuda_compile_generated_tvl1flow.cu.o Building NVCC (Device) object modules/gpu/CMakeFiles/cuda_compile.dir/src/cuda/./cuda_compile_generated_calib3d.cu.o Building NVCC (Device) object 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modules/gpu/CMakeFiles/cuda_compile.dir/src/cuda/./cuda_compile_generated_generalized_hough.cu.o [ 68%] Building NVCC (Device) object modules/gpu/CMakeFiles/cuda_compile.dir/src/cuda/./cuda_compile_generated_hough_lines.cu.o [ 68%] Building NVCC (Device) object modules/gpu/CMakeFiles/cuda_compile.dir/src/cuda/./cuda_compile_generated_column_filter.13.cu.o [ 68%] Building NVCC (Device) object modules/gpu/CMakeFiles/cuda_compile.dir/src/cuda/./cuda_compile_generated_blend.cu.o [ 68%] Building NVCC (Device) object modules/gpu/CMakeFiles/cuda_compile.dir/src/cuda/./cuda_compile_generated_bf_match.cu.o [ 69%] Building NVCC (Device) object modules/gpu/CMakeFiles/cuda_compile.dir/src/cuda/./cuda_compile_generated_pyr_up.cu.o [ 69%] Building NVCC (Device) object modules/gpu/CMakeFiles/cuda_compile.dir/src/cuda/./cuda_compile_generated_row_filter.7.cu.o [ 69%] Building NVCC (Device) object modules/gpu/CMakeFiles/cuda_compile.dir/src/cuda/./cuda_compile_generated_bilateral_filter.cu.o [ 69%] Building NVCC (Device) object modules/gpu/CMakeFiles/cuda_compile.dir/src/cuda/./cuda_compile_generated_canny.cu.o [ 69%] Building NVCC (Device) object modules/gpu/CMakeFiles/cuda_compile.dir/src/cuda/./cuda_compile_generated_element_operations.cu.o [ 69%] Building NVCC (Device) object modules/gpu/CMakeFiles/cuda_compile.dir/src/nvidia/NPP_staging/./cuda_compile_generated_NPP_staging.cu.o [ 69%] Building NVCC (Device) object modules/gpu/CMakeFiles/cuda_compile.dir/src/nvidia/./cuda_compile_generated_NCVHaarObjectDetection.cu.o [ 69%] Building NVCC (Device) object modules/gpu/CMakeFiles/cuda_compile.dir/src/nvidia/./cuda_compile_generated_NCVBroxOpticalFlow.cu.o [ 69%] Building NVCC (Device) object modules/gpu/CMakeFiles/cuda_compile.dir/src/nvidia/core/./cuda_compile_generated_NCVPyramid.cu.o [ 72%] Building CXX object modules/gpu/CMakeFiles/opencv_gpu.dir/src/cudastream.cpp.o [ 73%] [ 74%] [ 74%] [ 74%] Building NVCC (Device) object modules/superres/CMakeFiles/cuda_compile.dir/src/cuda/./cuda_compile_generated_btv_l1_gpu.cu.o Building NVCC (Device) object modules/nonfree/CMakeFiles/cuda_compile.dir/src/cuda/./cuda_compile_generated_surf.cu.o GM On Tue, May 19, 2020 at 11:20 AM Lugmayr, Wolfgang <w.l...@lu...> wrote: > hi, > > here is an example of my build of opencv with scipion libtiff on centos7: > > ./scipion install opencv -j N > cd software > ln -s lib lib64 > cd tmp/opencv-3.4.1 > rm -rf build; mkdir build; cd build > cmake -DWITH_FFMPEG=OFF -DWITH_CUDA:BOOL=ON-DWITH_LIBV4L=ON-DWITH_V4L=OFF -DCMAKE_INSTALL_PREFIX=/beegfs/cssb/software/em/scipion/2.0/software \ > -DTIFF_LIBRARY=/beegfs/cssb/software/em/scipion/2.0/software/lib/libtiff.so -DWITH_VTK=NO -DWITH_NVCUVID=NO .. > > maybe this solves some problems. > > cheers, > wolfgang > > > ------------------------------ > *From: *"David Maluenda" <dma...@cn...> > *To: *"Mailing list for Scipion users" < > sci...@li...> > *Sent: *Monday, 18 May, 2020 19:50:30 > *Subject: *Re: [scipion-users] Scipion 2.0, xmipp and libs openCV and > libtiff > > Hi George, > > We have experimented some issues when installing xmipp-optical-alignment > in CentOs, but some time we achieved it. Let's try! > > First, if you have installed some libraries after the first try installing > xmipp, you can try with making a new xmipp.config (it is done by > discovering paths). > > The xmipp.conf can be found at > scipion/software/em/xmippSrc-v3.19.04/xmipp.conf, please move it (or remove > it if not edited) and try again with the installation. > > > If not we can keep trying. > > Regards, > <http://ucm.es/> > > *_____Dr. David Maluenda Niubó* > dma...@cn... - (+34) 619 029 310 > CSIC - Centro Nacional de Biotecnología <http://www.cnb.csic.es> > BioComputing Unit <http://biocomputingunit.es/> > > This email message and any documents attached to it may contain > confidential or legally protected material and are intended solely for the > use of the individual or organization to whom they are addressed. We remind > you that if you are not the intended recipient of this email message or the > person responsible for processing it, then you are not authorized to read, > save, modify, send, copy or disclose any of its contents. If you have > received this email message by mistake, we kindly ask you to inform the > sender of this and to eliminate both the message and any attachments it > carries from your account. Thank you for your collaboration. > > > > On Mon, May 18, 2020 at 7:30 PM George Magklaras <gma...@gm...> > wrote: > >> Hi Erny, >> >> If I set the OPENCV=FALSE, I am able to build the xmippSrc plugin , >> however, when I try to perform an xmipp3 optical alignment (see attached >> screenshot), I get the error: >> "It seems that Xmipp Optical Alignment is not installed. OpenCV should be >> installed in the system to compile it. >> Please, install OpenCV in your system and, then, re-install Xmipp by >> running 'scipion installb xmippSrc'." >> >> The idea here is that I have a system with both libtiff4 and opencv >> installed as part of yum packages, however, it seems that this is not >> compatible with the scipion environment. I get the same error if I try to >> use the xmippBin_Centos binary plugin. My users need the optical alignment >> xmipp3 functionality. Any ideas? >> >> GM >> >> On Mon, May 18, 2020 at 6:58 PM Erney Ramírez Aportela < >> era...@cn...> wrote: >> >>> Hi George, >>> >>> Try changing OPENCV = FALSE in the configuration file. >>> >>> Best, >>> Erney >>> >>> >>> Quoting George Magklaras <gma...@gm...>: >>> >>> > Dear all, >>> > >>> > I have installed a fresh version of 'Scipion v2.0 (2019-04-23) >>> Diocletian' >>> > from sources on a GPU enabled CentOS 7 server (CentOS Linux release >>> > 7.8.2003 (Core) >>> > My scipion.conf file looks like this: >>> > >>> > [root@gpu1 config]# cat scipion.conf >>> > [DIRS_GLOBAL] >>> > SCIPION_TESTS = data/tests >>> > SCIPION_SOFTWARE = software >>> > >>> > [REMOTE] >>> > SCIPION_URL = http://scipion.cnb.csic.es/downloads/scipion >>> > SCIPION_URL_SOFTWARE = %(SCIPION_URL)s/software >>> > SCIPION_URL_TESTDATA = %(SCIPION_URL)s/data/tests >>> > >>> > [BUILD] >>> > CC = gcc >>> > CXX = g++ >>> > LINKERFORPROGRAMS = g++ >>> > CCFLAGS = -std=c99 >>> > CXXFLAGS = >>> > LINKFLAGS = >>> > MPI_CC = mpicc >>> > MPI_CXX = mpiCC >>> > MPI_LINKERFORPROGRAMS = mpiCC >>> > MPI_LIB = mpi >>> > MPI_LIBDIR = /usr/lib64/openmpi3/lib >>> > MPI_INCLUDE = /usr/include/openmpi3-x86_64 >>> > MPI_BINDIR = /usr/lib64/openmpi3/bin >>> > CUDA_LIB = /lsc/nvidia/cuda/8.0-GA2/lib64 >>> > CUDA_BIN = /lsc/nvidia/cuda/8.0-GA2/bin/nvcc >>> > NVCC = nvcc --x cu -D_FORCE_INLINES -Xcompiler -fPIC >>> > -Wno-deprecated-gpu-targets >>> > NVCC_INCLUDE = /lsc/nvidia/cuda/8.0-GA2/include >>> > NVCC_LIBDIR = %(CUDA_LIB)s >>> > MATLAB_DIR = /usr/local/MATLAB/R2011a >>> > JAVA_HOME = >>> /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.252.b09-2.el7_8.x86_64 >>> > JAVA_BINDIR = %(JAVA_HOME)s/bin >>> > JAVAC = %(JAVA_BINDIR)s/javac >>> > JAR = %(JAVA_BINDIR)s/jar >>> > JNI_CPPPATH = %(JAVA_HOME)s/include:%(JAVA_HOME)s/include/linux >>> > JAVA_MAX_MEMORY = 2 >>> > GTEST = False >>> > CUDA = True >>> > DEBUG = False >>> > MATLAB = False >>> > OPENCV = True >>> > OPENCV_VER = 2.4.13 >>> > REMOTE_MESA_LIB = /services/guacamole/usr/mesa/lib/ >>> > >>> > produced no warnings. After launching the GUI and using the plugin >>> manager >>> > to install the xmippSrc-3.19.04 plugin (part of the scipion-em-xmipp), >>> I >>> > hit a glitch. The way I understand it is that in essence, despite >>> having >>> > both the vanilla centOS packages for openCV and libtiff4: >>> > >>> > root@sekulicgpu1 config]# yum list installed | grep -i opencv >>> > opencv.x86_64 2.4.5-3.el7 @base >>> > >>> > opencv-core.x86_64 2.4.5-3.el7 @base >>> > >>> > opencv-devel.x86_64 2.4.5-3.el7 @base >>> > >>> > opencv-python.x86_64 2.4.5-3.el7 @base >>> > >>> > [root@sekulicgpu1 config]# yum list installed | grep -i libtiff >>> > compat-libtiff3.x86_64 3.9.4-12.el7 @base >>> > >>> > libtiff.x86_64 4.0.3-32.el7 @base >>> > >>> > libtiff-devel.x86_64 4.0.3-32.el7 @base >>> > >>> > libtiff-static.x86_64 4.0.3-32.el7 @base >>> > >>> > libtiff-tools.x86_64 4.0.3-32.el7 @base >>> > >>> > >>> > the compilation process from the plugin manager fails with this errors >>> > message (plugin.log): >>> > ... >>> > >>> > 01353: g++ -o bin/xmipp_transform_mask >>> > applications/programs/transform_mask/transform_mask_main.o >>> > >>> -L/lsc/scipion/2.0source/scipion/software/em/xmippSrc-v3.19.04/src/xmippCore/lib >>> > -Llib -Llib -L/lsc/scipion/2.0source/scipion/software/lib >>> > -L/lsc/scipion/2.0source/scipion/software/lib -L/usr/lib64/openmpi3/lib >>> > -L/lsc/nvidia/cuda/8.0-GA2/lib64 >>> > -L/lsc/scipion/2.0source/scipion/software/em/xmipp/lib >>> > -L/lsc/fftw/3.3.8withopenmpi/lib -L/usr/lib64/openmpi3/lib >>> > -L/lsc/nvidia/cuda/8.0-GA2/lib64 -lXmipp -lhdf5 -lhdf5_cpp -lfftw3 >>> > -lfftw3_threads -ljpeg -ltiff -lXmippCore >>> > 01354: g++ -o bin/xmipp_reconstruct_art_xray >>> > applications/programs/reconstruct_art_xray/reconstruct_art_xray_main.o >>> > >>> -L/lsc/scipion/2.0source/scipion/software/em/xmippSrc-v3.19.04/src/xmippCore/lib >>> > -Llib -Llib -L/lsc/scipion/2.0source/scipion/software/lib >>> > -L/lsc/scipion/2.0source/scipion/software/lib -L/usr/lib64/openmpi3/lib >>> > -L/lsc/nvidia/cuda/8.0-GA2/lib64 >>> > -L/lsc/scipion/2.0source/scipion/software/em/xmipp/lib >>> > -L/lsc/fftw/3.3.8withopenmpi/lib -L/usr/lib64/openmpi3/lib >>> > -L/lsc/nvidia/cuda/8.0-GA2/lib64 -lXmipp -lhdf5 -lhdf5_cpp -lfftw3 >>> > -lfftw3_threads -ljpeg -ltiff -lXmippCore >>> > 01355: g++ -o applications/programs/image_align/image_align_main.o -c >>> > -std=c++11 -O3 -Iexternal -Ilibraries >>> > >>> -I/lsc/scipion/2.0source/scipion/software/em/xmippSrc-v3.19.04/src/xmippCore >>> > -I/lsc/scipion/2.0source/scipion/software/em/xmippSrc-v3.19.04/src >>> > -I/lsc/scipion/2.0source/scipion/software/include >>> > applications/programs/image_align/image_a01356: lign_main.cpp >>> > 01357: g++ -o >>> > >>> applications/programs/validation_tilt_pairs/validation_tilt_pairs_main.o -c >>> > -std=c++11 -O3 -Iexternal -Ilibraries >>> > >>> -I/lsc/scipion/2.0source/scipion/software/em/xmippSrc-v3.19.04/src/xmippCore >>> > -I/lsc/scipion/2.0source/scipion/software/em/xmippSrc-v3.19.04/src >>> > -I/lsc/scipion/2.0source/scipion/software/include >>> > >>> applications/programs/validation_tilt_pairs/validation_tilt_pairs_main.cpp >>> > 01358: g++ -o bin/xmipp_validation_tilt_pairs >>> > >>> applications/programs/validation_tilt_pairs/validation_tilt_pairs_main.o >>> > >>> -L/lsc/scipion/2.0source/scipion/software/em/xmippSrc-v3.19.04/src/xmippCore/lib >>> > -Llib -Llib -L/lsc/scipion/2.0source/scipion/software/lib >>> > -L/lsc/scipion/2.0source/scipion/software/lib -L/usr/lib64/openmpi3/lib >>> > -L/lsc/nvidia/cuda/8.0-GA2/lib64 >>> > -L/lsc/scipion/2.0source/scipion/software/em/xmipp/lib >>> > -L/lsc/fftw/3.3.8withopenmpi/lib -L/usr/lib64/openmpi3/lib >>> > -L/lsc/nvidia/cuda/8.0-GA2/lib64 -lXmipp -lhdf5 -lhdf5_cpp -lfftw3 >>> > -lfftw3_threads -ljpeg -ltiff -lXmippCore >>> > 01359: g++ -o >>> > >>> applications/programs/metadata_convert_to_spider/metadata_convert_to_spider_main.o >>> > -c -std=c++11 -O3 -Iexternal -Ilibraries >>> > >>> -I/lsc/scipion/2.0source/scipion/software/em/xmippSrc-v3.19.04/src/xmippCore >>> > -I/lsc/scipion/2.0source/scipion/software/em/xmippSrc-v3.19.04/src >>> > -I/lsc/scipion/2.0source/scipion/software/include >>> > >>> applications/programs/metadata_convert_to_spider/metadata_convert_to_spider_main.cpp >>> > 01360: g++ -o bin/xmipp_movie_optical_alignment_cpu >>> > >>> applications/programs/movie_optical_alignment_cpu/movie_optical_alignment_cpu.o >>> > >>> -L/lsc/scipion/2.0source/scipion/software/em/xmippSrc-v3.19.04/src/xmippCore/lib >>> > -Llib -Llib -L/lsc/scipion/2.0source/scipion/software/lib >>> > -L/lsc/scipion/2.0source/scipion/software/lib -L/usr/lib64/openmpi3/lib >>> > -L/lsc/nvidia/cuda/8.0-GA2/lib64 >>> > -L/lsc/scipion/2.0source/scipion/software/em/xmipp/lib >>> > -L/lsc/fftw/3.3.8withopenmpi/lib -L/usr/lib64/openmpi3/lib >>> > -L/lsc/nvidia/cuda/8.0-GA2/lib64 -lopencv_core -lopencv_imgproc >>> > -lopencv_video -lopencv_calib3d -lXmipp -lhdf5 -lhdf5_cpp -lfftw3 >>> > -lfftw3_threads -ljpeg -ltiff -lXmippCore >>> > 01361: //usr/lib64/libopencv_highgui.so.2.4: undefined reference to >>> > `TIFFIsTiled@LIBTIFF_4.0' >>> > 01362: //usr/lib64/libopencv_highgui.so.2.4: undefined reference to >>> > `TIFFOpen@LIBTIFF_4.0' >>> > 01363: //usr/lib64/libopencv_highgui.so.2.4: undefined reference to >>> > `TIFFReadEncodedStrip@LIBTIFF_4.0' >>> > 01364: //usr/lib64/libopencv_highgui.so.2.4: undefined reference to >>> > `TIFFSetField@LIBTIFF_4.0' >>> > 01365: //usr/lib64/libopencv_highgui.so.2.4: undefined reference to >>> > `TIFFWriteScanline@LIBTIFF_4.0' >>> > 01366: //usr/lib64/libopencv_highgui.so.2.4: undefined reference to >>> > `TIFFGetField@LIBTIFF_4.0' >>> > 01367: //usr/lib64/libopencv_highgui.so.2.4: undefined reference to >>> > `TIFFScanlineSize@LIBTIFF_4.0' >>> > 01368: //usr/lib64/libopencv_highgui.so.2.4: undefined reference to >>> > `TIFFSetWarningHandler@LIBTIFF_4.0' >>> > 01369: //usr/lib64/libopencv_highgui.so.2.4: undefined reference to >>> > `TIFFSetErrorHandler@LIBTIFF_4.0' >>> > 01370: //usr/lib64/libopencv_highgui.so.2.4: undefined reference to >>> > `TIFFReadEncodedTile@LIBTIFF_4.0' >>> > 01371: //usr/lib64/libopencv_highgui.so.2.4: undefined reference to >>> > `TIFFReadRGBATile@LIBTIFF_4.0' >>> > 01372: //usr/lib64/libopencv_highgui.so.2.4: undefined reference to >>> > `TIFFClose@LIBTIFF_4.0' >>> > 01373: //usr/lib64/libopencv_highgui.so.2.4: undefined reference to >>> > `TIFFRGBAImageOK@LIBTIFF_4.0' >>> > 01374: //usr/lib64/libopencv_highgui.so.2.4: undefined reference to >>> > `TIFFReadRGBAStrip@LIBTIFF_4.0' >>> > 01375: collect2: error: ld returned 1 exit status >>> > 01376: scons: *** [bin/xmipp_movie_optical_alignment_cpu] Error 1 >>> > 01377: scons: building terminated because of errors. >>> > 01378: >>> > 01379: Some error found compiling 'xmipp_movie_optical_alignment_cpu' >>> > program. >>> > 01380: You can skip this program by including 'OPENCV=False' in the >>> > config file. >>> > 01381: >>> > 01382: Some error occurred during the compilation of 'xmipp'. >>> > 01383: >>> > 01384: 2020-05-18 16:47:06,240 INFO: Error executing the operation: >>> > install xmippSrc-3.19.04 >>> > >>> > Can you please suggest how to resolve this? If the Centos packaged >>> libs are >>> > not suitable, which ones should I use to compile the source plugin >>> > properly? >>> > >>> > Best regards, >>> > GM >>> > >>> > NCMM - University of Oslo >>> >>> _______________________________________________ >>> scipion-users mailing list >>> sci...@li... >>> https://lists.sourceforge.net/lists/listinfo/scipion-users >>> >> _______________________________________________ >> scipion-users mailing list >> sci...@li... >> https://lists.sourceforge.net/lists/listinfo/scipion-users >> > > > _______________________________________________ > scipion-users mailing list > sci...@li... > https://lists.sourceforge.net/lists/listinfo/scipion-users > _______________________________________________ > scipion-users mailing list > sci...@li... > https://lists.sourceforge.net/lists/listinfo/scipion-users > |
