Re: [scipion-users] java error opening the extraction particle file with built-in ImageJ

[Jose M. de la R. T. <del...@gm...>]

Hi Dmitry,

Depending on how many particles do you have and their dimensions, ImageJ
can have some memory issues if the dataset is too big to be read into RAM
memory.

Hope this helps,
Best,
Jose Miguel




On Tue, May 5, 2020 at 5:33 PM Dmitry A. Semchonok <sem...@gm...>
wrote:

> Dear Grigory,
>
>
>
> Yes (please see the attachment), so
>
>
>
> Relion particles extraction protocol (analyze)à then see the particles
> gallery (open with imageJ) à then the program crashes with the java error.
>
>
>
>
>
> Thank you!
>
>
>
> Sincerely,
>
> Dmitry
>
>
>
> Sent from Mail <https://go.microsoft.com/fwlink/?LinkId=550986> for
> Windows 10
>
>
>
> *From: *Grigory Sharov <sha...@gm...>
> *Sent: *Tuesday, May 5, 2020 1:41 PM
> *To: *Mailing list for Scipion users <sci...@li...>
> *Subject: *Re: [scipion-users] java error opening the extraction particle
> file with built-in ImageJ
>
>
>
> Hi,
>
>
>
> Could you be more specific? What is relion extraction file? Sqlite? Mrcs?
> Star ? What error?
>
>
>
>
>
>
>
> On Tue, May 5, 2020, 12:38 Dmitry A. Semchonok <sem...@gm...>
> wrote:
>
> Dear colleagues,
>
>
>
> While opening the relion-extraction file with ImageJ, I’m getting the java
> error.
>
> Are there any options to open this extracted particle file directly from
> the folder with ImageJ?
>
> I want to do stk from the extracted particles.
>
>
>
> Sincerely,
>
> Dmitry
>
>
>
>
>
> Sent from Mail <https://go.microsoft.com/fwlink/?LinkId=550986> for
> Windows 10
>
>
>
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