Re: [scipion-users] How to download test data sets to learn Scipion

[Jorge <jji...@cn...>]

Hi Faisal,

The datasets are automatically downloaded when a running test needs 
them. I think this could be a good starting point.

https://scipion-em.github.io/docs/docs/developer/running-tests.html?highlight=running%20tests

On the other hand, the command 'scipion tutorial intro' is referred to 
be written in a terminal (command line). On that command, 'scipion' is 
an alias, which can be created in the bashrc file or can be directly 
executed in the terminal as 
'PATH_TO_YOUR_SCIPION_INSTALLATION_DIR/scipion tutorial intro'.

All datasets downloaded will be stored at 
PATH_TO_YOUR_SCIPION_INSTALLATION_DIR/scipion/data/tests.

Hope it helps.

Best regards,

Jorge


On 17/3/20 7:04, khaja faisal tarique wrote:
> Dear community members
>
> I am a new user of Scipion and trying to learn the workflow of single 
> particle cryoEM by myself. I have installed Scipion 2.0 on my linux 
> system and now want to download some test datasets from the tutorial 
> section. But i don't know how to download these files. lets say if I 
> want to do a reconstruction of a viral capsid or Apoferritin or Bgal, 
> then according to the tutorial I only need to type:
>
> scipion tutorial intro
>
> This command will download (if this was not done earlier) the test 
> data in direc-
>
> tory
>
>
> $SCIPION_HOME/data/tests/xmipp_tutorial
>
>
> My question is where to type this command and what sets of path I 
> should follow to download it. Can it be done through Scipion GUI 
> (similar to Phenix or ccpem) or it has to be done through the terminal.
>
>
> Please help me out in downloading these test datasets. Being a new 
> user and having limited knowledge of Linux commands I am stuck.
>
>
> -- 
> Best Regards
>
> Faisal
>
>
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