Re: [scipion-users] How to download test data sets to learn Scipion

[khaja f. t. <kha...@gm...>]

Alright..Tahnk you very much

Best Regards

Faisal

On Tue, 17 Mar 2020, 1:53 pm Pablo Conesa, <pc...@cn...> wrote:

> "./scipion tutorial *i**ntro*"  should download: xmipp_tutorial dataset
>
> Looking at the code, that would be the only one that downloads a dataset
>
>
> If you want some datasets you can:
>
>
> 1.- Download any from test datasets typing:
>
> *./scipion testdata list*
>
> and then
>
> *./scipion testdata --download <name of the dataset as listed>*
>
>
> 2.- You can download any dataset from EMPIAR: e.g.:
> https://www.ebi.ac.uk/pdbe/emdb/empiar/entry/10200/
>
>
> On 17/3/20 8:04, khaja faisal tarique wrote:
>
> Hi Pconesa
>
> I haven't tried it but now going to do. One question. Will it download all
> the datasets from different projects (Bgal/ApoF/BPV) or just anyone of
> these.
>
> Thanks
>
> On Tue, Mar 17, 2020 at 12:16 PM <pc...@cn...> wrote:
>
>> Have you tried to type :
>>
>> cd path/to/where/you've/installed/scipion
>>
>> ./scipion tutorial intro
>>
>> In a terminal window (black ones)
>> ase
>> El 17 mar. 2020 7:04, khaja faisal tarique <kha...@gm...>
>> escribió:
>>
>> Dear community members
>>
>> I am a new user of Scipion and trying to learn the workflow of single
>> particle cryoEM by myself. I have installed Scipion 2.0 on my linux system
>> and now want to download some test datasets from the tutorial section. But
>> i don't know how to download these files. lets say if I want to do a
>> reconstruction of a viral capsid or Apoferritin or Bgal, then according to
>> the tutorial I only need to type:
>>
>> scipion tutorial intro
>>
>> This command will download (if this was not done earlier) the test data
>> in direc-
>>
>> tory
>>
>>
>> $SCIPION_HOME/data/tests/xmipp_tutorial
>>
>>
>> My question is where to type this command and what sets of path I should
>> follow to download it. Can it be done through Scipion GUI (similar to
>> Phenix or ccpem) or it has to be done through the terminal.
>>
>>
>> Please help me out in downloading these test datasets. Being a new user
>> and having limited knowledge of Linux commands I am stuck.
>>
>> --
>> Best Regards
>>
>> Faisal
>>
>>
>> _______________________________________________
>> scipion-users mailing list
>> sci...@li...
>> https://lists.sourceforge.net/lists/listinfo/scipion-users
>>
>
>
> --
> Faisal Tarique Khaja
> Research Associate
> Indian Institute of Science
> Bangalore, India
>
>
> _______________________________________________
> scipion-users mailing lis...@li...https://lists.sourceforge.net/lists/listinfo/scipion-users
>
> --
> Pablo Conesa - *Madrid Scipion <http://scipion.i2pc.es> team*
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