Re: [scipion-users] How to download test data sets to learn Scipion

[Pablo C. <pc...@cn...>]

"./scipion tutorial *i**ntro*"  should download: xmipp_tutorial dataset

Looking at the code, that would be the only one that downloads a dataset


If you want some datasets you can:


1.- Download any from test datasets typing:

*./scipion testdata list*

and then

*./scipion testdata --download <name of the dataset as listed>*


2.- You can download any dataset from EMPIAR: e.g.: 
https://www.ebi.ac.uk/pdbe/emdb/empiar/entry/10200/


On 17/3/20 8:04, khaja faisal tarique wrote:
> Hi Pconesa
>
> I haven't tried it but now going to do. One question. Will it download 
> all the datasets from different projects (Bgal/ApoF/BPV) or just 
> anyone of these.
>
> Thanks
>
> On Tue, Mar 17, 2020 at 12:16 PM <pc...@cn... 
> <mailto:pc...@cn...>> wrote:
>
>     Have you tried to type :
>
>     cd path/to/where/you've/installed/scipion
>
>     ./scipion tutorial intro
>
>     In a terminal window (black ones)
>     ase
>     El 17 mar. 2020 7:04, khaja faisal tarique
>     <kha...@gm...
>     <mailto:kha...@gm...>> escribió:
>
>         Dear community members
>
>         I am a new user of Scipion and trying to learn the workflow of
>         single particle cryoEM by myself. I have installed Scipion 2.0
>         on my linux system and now want to download some test datasets
>         from the tutorial section. But i don't know how to download
>         these files. lets say if I want to do a reconstruction of a
>         viral capsid or Apoferritin or Bgal, then according to the
>         tutorial I only need to type:
>
>         scipion tutorial intro
>
>         This command will download (if this was not done earlier) the
>         test data in direc-
>
>         tory
>
>
>         $SCIPION_HOME/data/tests/xmipp_tutorial
>
>
>         My question is where to type this command and what sets of
>         path I should follow to download it. Can it be done through
>         Scipion GUI (similar to Phenix or ccpem) or it has to be done
>         through the terminal.
>
>
>         Please help me out in downloading these test datasets. Being a
>         new user and having limited knowledge of Linux commands I am
>         stuck.
>
>
>         -- 
>         Best Regards
>
>         Faisal
>
>
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>
>
>
> -- 
> Faisal Tarique Khaja
> Research Associate
> Indian Institute of Science
> Bangalore, India
>
>
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-- 
Pablo Conesa - *Madrid Scipion <http://scipion.i2pc.es> team*