Re: [scipion-users] How to download test data sets to learn Scipion

[<pc...@cn...>]

<div dir='auto'>Have you tried to type :<div dir="auto"><br></div><div dir="auto">cd path/to/where/you've/installed/scipion<br><div dir="auto"><br></div><div dir="auto">./scipion tutorial intro</div><div dir="auto"><br></div><div dir="auto">In a terminal window (black ones)</div></div></div><div class="gmail_extra"><br><div class="gmail_quote">El 17 mar. 2020 7:04, khaja faisal tarique &lt;kha...@gm...&gt; escribió:<br type="attribution" /><blockquote class="quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div dir="ltr">Dear community members<div><br /></div><div>I am a new user of Scipion and trying to learn the workflow of single particle cryoEM by myself. I have installed Scipion 2.0 on my linux system and now want to download some test datasets from the tutorial section. But i don&#39;t know how to download these files. lets say if I want to do a reconstruction of a viral capsid or Apoferritin or Bgal, then according to the tutorial I only need to type<font face="Helvetica"><span style="font-size:12px">:</span></font></div><div><font face="Helvetica"><span style="font-size:12px"><br /></span></font></div><div><p style="margin:0px;font-stretch:normal;font-size:12px;line-height:normal;font-family:&#39;helvetica&#39;">scipion tutorial intro</p>
<p style="margin:0px;font-stretch:normal;font-size:12px;line-height:normal;font-family:&#39;helvetica&#39;">This command will download (if this was not done earlier) the test data in direc-</p>
<p style="margin:0px;font-stretch:normal;font-size:12px;line-height:normal;font-family:&#39;helvetica&#39;">tory</p>
<p style="margin:0px;font-stretch:normal;font-size:12px;line-height:normal;font-family:&#39;helvetica&#39;"><br /></p><p style="margin:0px;font-stretch:normal;font-size:12px;line-height:normal;font-family:&#39;helvetica&#39;">$SCIPION_HOME/data/tests/xmipp_tutorial</p><p style="margin:0px;font-stretch:normal;font-size:12px;line-height:normal;font-family:&#39;helvetica&#39;"><br /></p><p style="margin:0px;font-stretch:normal;font-size:12px;line-height:normal;font-family:&#39;helvetica&#39;">My question is where to type this command and what sets of path I should follow to download it. Can it be done through Scipion GUI (similar to Phenix or ccpem) or it has to be done through the terminal.</p><p style="margin:0px;font-stretch:normal;font-size:12px;line-height:normal;font-family:&#39;helvetica&#39;"><br /></p><p style="margin:0px;font-stretch:normal;font-size:12px;line-height:normal;font-family:&#39;helvetica&#39;">Please help me out in downloading these test datasets. Being a new user and having limited knowledge of Linux commands I am stuck.</p><div><br /></div>-- <br /><div dir="ltr"><div dir="ltr"><div><div dir="ltr">Best Regards</div></div><div dir="ltr"><br /></div><div>Faisal</div></div></div></div></div></div>
</blockquote></div><br></div>