[scipion-users] scipion install issues: xmipp won't install underneath

[Philip R. B. <pr...@gm...>]

Hi Everyone,
 I am sure it is an old topic, but I am having trouble installing xmipp
underneath
scipion which seemed to install quite nicely at the high level.

 Here is the scipion error after xmipp installation through the scipion gui.

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Scipion v2.0 (2019-04-23) Diocletian

>>>>> python  /home/software/SCIPION/scipion/pyworkflow/apps/pw_manager.py

Xmipp installation have failed or xmipp's C++ binnding have some problem:
/usr/lib/x86_64-linux-gnu/libfftw3_threads.so.3: undefined symbol:
fftw_set_planner_hooks

  > Please, remove the Xmipp installation (usually 'rm software/em/xmipp')
and re-install it

Traceback (most recent call last):
  File "/home/software/SCIPION/scipion/pyworkflow/apps/pw_manager.py", line
32, in <module>
    from pyworkflow.gui.project import ProjectManagerWindow
  File "/home/software/SCIPION/scipion/pyworkflow/gui/project/__init__.py",
line 27, in <module>
    from project import ProjectManagerWindow, ProjectWindow
  File "/home/software/SCIPION/scipion/pyworkflow/gui/project/project.py",
line 45, in <module>
    from pyworkflow.project import MenuConfig, ProjectSettings
  File "/home/software/SCIPION/scipion/pyworkflow/project/__init__.py",
line 28, in <module>
    from .project import Project, MissingProjectDbException
  File "/home/software/SCIPION/scipion/pyworkflow/project/project.py", line
37, in <module>
    import pyworkflow.em as em
  File "/home/software/SCIPION/scipion/pyworkflow/em/__init__.py", line 31,
in <module>
    from data import *
  File "/home/software/SCIPION/scipion/pyworkflow/em/data.py", line 36, in
<module>
    from convert import ImageHandler
  File "/home/software/SCIPION/scipion/pyworkflow/em/convert/__init__.py",
line 28, in <module>
    from .image_handler import ImageHandler, DT_FLOAT
  File
"/home/software/SCIPION/scipion/pyworkflow/em/convert/image_handler.py",
line 38, in <module>
    sys.exit(-1)
NameError: name 'sys' is not defined

--------------------------------------------------------------------------------------------

   Thank you in advance,

                       Philip Baldwin
                    The Salk Institute