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Re: [scipion-users] Greetings and a question
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From: Ian L. R. <ian...@ln...> - 2019-12-05 10:54:14
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Pablo, I would love to join the slack community! ________________________________ From: Pablo Conesa <pc...@cn...> Sent: Thursday, December 5, 2019 4:41 To: sci...@li... <sci...@li...> Subject: Re: [scipion-users] Greetings and a question We are also planning to organize a course for developers this summer. Keep tunned. On 4/12/19 19:52, Pablo Conesa wrote: Dear Ian, I guess you've already found the developers page<https://scipion-em.github.io/docs/docs/developer/developers.html>, there are lots of info but also work to be done. But recently we updated it. More precisely answering your questions: Scipion has it's own model where Em "concepts" are reflected. Micrograph is here -->https://github.com/I2PC/scipion/blob/master/pyworkflow/em/data.py#L642 They are pointers, all the binary files remain in the file system and only the paths to them are kept in the sqlites files. Usually the protocol you implement needs to take that into consideration, see an example here: https://github.com/scipion-em/scipion-em-sphire/blob/master/sphire/protocols/protocol_cryolo_picking.py#L188 But many of the protocols have somehow a "possible" conversion step. We run a slack workspace for developers and facility managers to have more direct conversations. I can add you if you want. Keep asking your doubts, we are here to help you. All the best, Pablo On 4/12/19 16:26, Ian Liu Rodrigues wrote: Dear Scipion community, I'm Ian Liu Rodrigues, working with software development at the National Laboratory of Nanotechnology, Brazil. I'm trying to understand how the plugin architecture works so I can make my own plugins. Here are my questions: * How is a micrograph represented inside Scipion? * Is the image imported into the database or just pointers to external files? * How does Scipion knows when to convert an input to a program? I'm very new to this, so sorry if I'm asking anything basic 😉 Kind regards, 👨💻 Ian L. Rodrigues 🏢 CNPEM, LNNano, CME 📞 +55 19 3512 1144 Aviso Legal: Esta mensagem e seus anexos podem conter informações confidenciais e/ou de uso restrito. Observe atentamente seu conteúdo e considere eventual consulta ao remetente antes de copiá-la, divulgá-la ou distribuí-la. Se você recebeu esta mensagem por engano, por favor avise o remetente e apague-a imediatamente. Disclaimer: This email and its attachments may contain confidential and/or privileged information. Observe its content carefully and consider possible querying to the sender before copying, disclosing or distributing it. If you have received this email by mistake, please notify the sender and delete it immediately. _______________________________________________ scipion-users mailing list sci...@li...<mailto:sci...@li...> https://lists.sourceforge.net/lists/listinfo/scipion-users -- Pablo Conesa - Madrid Scipion<http://scipion.i2pc.es> team _______________________________________________ scipion-users mailing list sci...@li...<mailto:sci...@li...> https://lists.sourceforge.net/lists/listinfo/scipion-users -- Pablo Conesa - Madrid Scipion<http://scipion.i2pc.es> team |
