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Re: [scipion-users] Installation problems (WSL)
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From: Pablo C. <pc...@cn...> - 2019-08-14 06:57:55
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Sorry, chances not changes. On 14/8/19 8:53, Pablo Conesa wrote: > > I guess changes of this > (https://github.com/python-zk/kazoo/issues/239) being your case are > low, but just in case? > > > On 13/8/19 15:51, Viktor Bengtsson wrote: >> >> Thanks for the suggestion. Unfortunately I get the same error: >> >> /mnt/e/Linux_programs/scipion$ scipion python -m pip install requests >> >> Scipion v2.0 (2019-04-23) Diocletian >> >> >>>>> python "-m" "pip" "install" "requests" >> >> Traceback (most recent call last): >> >> File >> "/mnt/e/Linux_programs/scipion/scipion/software/lib/python2.7/runpy.py", >> line 174, in _run_module_as_main >> >> "__main__", fname, loader, pkg_name) >> >> File >> "/mnt/e/Linux_programs/scipion/scipion/software/lib/python2.7/runpy.py", >> line 72, in _run_code >> >> exec code in run_globals >> >> File >> "/mnt/e/Linux_programs/scipion/scipion/software/lib/python2.7/site-packages/pip/__main__.py", >> line 16, in <module> >> >> from pip._internal import main as _main # isort:skip # noqa >> >> File >> "/mnt/e/Linux_programs/scipion/scipion/software/lib/python2.7/site-packages/pip/_internal/__init__.py", >> line 19, in <module> >> >> from pip._vendor.urllib3.exceptions import DependencyWarning >> >> File >> "/mnt/e/Linux_programs/scipion/scipion/software/lib/python2.7/site-packages/pip/_vendor/urllib3/__init__.py", >> line 8, in <module> >> >> from .connectionpool import ( >> >> File >> "/mnt/e/Linux_programs/scipion/scipion/software/lib/python2.7/site-packages/pip/_vendor/urllib3/connectionpool.py", >> line 44, in <module> >> >> from .util.queue import LifoQueue >> >> File >> "/mnt/e/Linux_programs/scipion/scipion/software/lib/python2.7/site-packages/pip/_vendor/urllib3/util/queue.py", >> line 7, in <module> >> >> import Queue as _unused_module_Queue # noqa: F401 >> >> File >> "/mnt/e/Linux_programs/scipion/scipion/software/lib/python2.7/site-packages/pip/_vendor/urllib3/util/Queue.py", >> line 10, in <module> >> >> class LifoQueue(queue.Queue): >> >> AttributeError: 'module' object has no attribute 'Queue' >> >> Kind regards, >> >> Viktor >> >> *From:*Pablo Conesa <pc...@cn...> >> *Sent:* den 13 augusti 2019 14:40 >> *To:* sci...@li... >> *Subject:* Re: [scipion-users] Installation problems (WSL) >> >> What if you do: >> >> scipion python -m pip install requests >> >> On 13/8/19 13:18, Viktor Bengtsson wrote: >> >> Hi, >> >> I tried what you suggested, but nothing seems to work. All >> packages installed prior to requests seem to install properly, so >> I wonder if there is something in particular related to that >> package that causes an error. Alternatively, is there some >> workaround to install that package into site-packages without >> using pip included with the installation of Scipion? >> >> Kind regards, >> >> Viktor >> >> *From:*Lugmayr, Wolfgang <w.l...@uk...> >> <mailto:w.l...@uk...> >> *Sent:* den 12 augusti 2019 16:47 >> *To:* Mailing list for Scipion users >> <sci...@li...> >> <mailto:sci...@li...> >> *Subject:* Re: [scipion-users] Installation problems (WSL) >> >> hi, >> >> maybe your os python is mixed up with the scipion one: >> >> can you check the following environment variables and test to set >> the scipion path first? >> >> LD_LIBRARY_PATH /whereever.../scipion/software/lib >> PYTHONPATH /whereever.../scipion/software/lib >> >> cheers, >> >> wolfgang >> >> ------------------------------------------------------------------------ >> >> *From: *"Viktor Bengtsson" <vik...@mm... >> <mailto:vik...@mm...>> >> *To: *"Mailing list for Scipion users" >> <sci...@li... >> <mailto:sci...@li...>> >> *Sent: *Monday, 12 August, 2019 14:49:20 >> *Subject: *[scipion-users] Installation problems (WSL) >> >> Dear all, >> >> Before summer I could use Scipion without problem. However, after >> vacation (and possibly some change in environment) it would not >> start at all. Unfortunately I did not save the error message >> before trying to reinstall, and reinstallation does not seem to >> work at all. >> >> The initial attempt was made on Ubuntu 16.04 installed through >> WSL on my work computer. I also tried installing on Ubuntu 18.04 >> installed on WSL on my home computer (where I have not used WSL >> at all previously, so no prior python installation). In all cases >> there have been a number of problems compiling python packages, >> and I can’t start Scipion. >> >> I followed the instructions found at >> https://scipion-em.github.io/docs/docs/scipion-modes/how-to-install, >> both for “From Binaries” and “Sources from GitHub”. The attached >> log files should include all input and all output. >> >> Does anyone know what might be the problem? >> >> Kind regards, >> >> Viktor Bengtsson >> >> PhD student >> >> Stockholm University >> >> PS. The final error I get when attempting to install from sources >> is : >> >> /mnt/e/Linux_programs/scipion/scipion/software/bin/python >> /mnt/e/Linux_programs/scipion/scipion/software/lib/python2.7/site-packages/pip >> install requests==2.18.4 >> >> Traceback (most recent call last): >> >> File >> "/mnt/e/Linux_programs/scipion/scipion/software/lib/python2.7/runpy.py", >> line 174, in _run_module_as_main >> >> "__main__", fname, loader, pkg_name) >> >> File >> "/mnt/e/Linux_programs/scipion/scipion/software/lib/python2.7/runpy.py", >> line 72, in _run_code >> >> exec code in run_globals >> >> File >> "/mnt/e/Linux_programs/scipion/scipion/software/lib/python2.7/site-packages/pip/__main__.py", >> line 16, in <module> >> >> from pip._internal import main as _main # isort:skip # noqa >> >> File >> "/mnt/e/Linux_programs/scipion/scipion/software/lib/python2.7/site-packages/pip/_internal/__init__.py", >> line 19, in <module> >> >> from pip._vendor.urllib3.exceptions import DependencyWarning >> >> File >> "/mnt/e/Linux_programs/scipion/scipion/software/lib/python2.7/site-packages/pip/_vendor/urllib3/__init__.py", >> line 7, in <module> >> >> from .connectionpool import ( >> >> File >> "/mnt/e/Linux_programs/scipion/scipion/software/lib/python2.7/site-packages/pip/_vendor/urllib3/connectionpool.py", >> line 45, in <module> >> >> from .util.queue import LifoQueue >> >> File >> "/mnt/e/Linux_programs/scipion/scipion/software/lib/python2.7/site-packages/pip/_vendor/urllib3/util/queue.py", >> line 7, in <module> >> >> import Queue as _unused_module_Queue # noqa: F401 >> >> File >> "/mnt/e/Linux_programs/scipion/scipion/software/lib/python2.7/site-packages/pip/_vendor/urllib3/util/Queue.py", >> line 10, in <module> >> >> class LifoQueue(queue.Queue): >> >> AttributeError: 'module' object has no attribute 'Queue' >> >> Error: target >> '/mnt/e/Linux_programs/scipion/scipion/software/lib/python2.7/site-packages/requests' >> not built (after running >> '/mnt/e/Linux_programs/scipion/scipion/software/bin/python >> /mnt/e/Linux_programs/scipion/scipion/software/lib/python2.7/site-packages/pip >> install requests==2.18.4') >> >> The original error (that reoccurred after installing from >> binaries) is: >> >> user@WORKCOMPUTER:/mnt/e/Linux_programs/scipion/scipion$ scipion >> >> Scipion v2.0 (2019-04-23) Diocletian >> >> >>>>> python /mnt/e/Linux_programs/scipion/scipion/pyworkflow/apps/pw_manager.py >> >> Traceback (most recent call last): >> >> File >> "/mnt/e/Linux_programs/scipion/scipion/pyworkflow/apps/pw_manager.py", >> line 32, in <module> >> >> from pyworkflow.gui.project import ProjectManagerWindow >> >> File >> "/mnt/e/Linux_programs/scipion/scipion/pyworkflow/gui/__init__.py", >> line 27, in <module> >> >> from gui import * >> >> File >> "/mnt/e/Linux_programs/scipion/scipion/pyworkflow/gui/gui.py", >> line 29, in <module> >> >> import Tkinter as tk >> >> File >> "/mnt/e/Linux_programs/scipion/scipion/software/lib/python2.7/site-packages/Tkinter/__init__.py", >> line 6, in <module> >> >> from Tkinter import (_cnfmerge, _default_root, _flatten, >> >> ImportError: cannot import name _cnfmerge >> >> >> >> _______________________________________________ >> scipion-users mailing list >> sci...@li... >> <mailto:sci...@li...> >> https://lists.sourceforge.net/lists/listinfo/scipion-users >> >> sers">https://lists.sourceforge.net/lists/listinfo/scipion-users >> >> >> _______________________________________________ >> >> scipion-users mailing list >> >> sci...@li... <mailto:sci...@li...> >> >> https://lists.sourceforge.net/lists/listinfo/scipion-users >> >> > >> >> ot;Times New Roman",serif;color:windowtext;mso-fareast-language:SV">> >> >> >> _______________________________________________ >> scipion-users mailing list >> sci...@li... >> https://lists.sourceforge.net/lists/listinfo/scipion-users > -- > Pablo Conesa - *Madrid Scipion <http://scipion.i2pc.es> team* > > > _______________________________________________ > scipion-users mailing list > sci...@li... > https://lists.sourceforge.net/lists/listinfo/scipion-users -- Pablo Conesa - *Madrid Scipion <http://scipion.i2pc.es> team* |
