Re: [scipion-users] Suggestion for Integrating Thunder into Scipion

[范宏成 <187...@16...>]

I understand it . Thank you Pablo!


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范宏成
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On 7/12/2019 18:25，Pablo Conesa<pc...@cn...> wrote：

Hi Fan Hongcheng,

We are currently working on Cryosparc and Topaz....many other developer maintain several packages and the more we add the more we need to maintain.

Integrating all the methods that appear every year, plus updating existing ones is out of our reach.

Scipion is full of pickers (Xmipp, Relion, Cryolo, Topaz,  GAutomatch, Eman (boxer, sparx), dogpicker,....)

Of course Thunder, might be great, and if at some point it prove to be in another level, we might invest time in it. All we can do now is to register your interest and make a call to developers (other than us) to collaborate, maybe


Authors of thunder picker could be interested in this. We offer support and help to developers to integrate their packages.

Regarding Cryosparc plugin, we will probably release it today, good news!!




You must subscribe to the list in order for your messages to be authorized, I've let them pass today.

Thank you very much for your suggestion, I'm sorry we, alone, can not afford to integrate/maintain all is out there.




All the best, Pablo.


On 12/7/19 11:45, 范宏成 wrote:

Hi Developers,
Have you tried  the Thunder single particle program(See this paper https://www.nature.com/articles/s41592-018-0223-8)? I find this program can tolerate bad particles and  get higher resolution、quality cryo-em map compared to the relion 3.0 using the same particle in my datasets. I hear that the newest version of Thunder will be released next week. Maybe Scipion can integrate this program in plugin? By the way, I also use cryosparc2 . Can Scipion integrat it too? I also sent emails to scipion-userlist. But it gave me response like "Is being held until the list moderator can review it for approval." Is it ok?


Fan Hongcheng


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范宏成
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