Re: [scipion-users] eman2 and chimera issues

[Laura <lde...@cn...>]

Hi Katherine,

it seems that you are trying to use eman-2.12 while scipion 
automatically installs 2.21.

Could you check your environmental variables opening the plugin manager 
and then Configuration/Variables on the top menu?

For instance I have:

If you are using eman 2.12 you should add the variable with your version 
either on your $HOME/.config/scipion/scipion.conf file or on the scipion 
one (scipion_path/config/scipion.conf)

Regarding chimera, check that whatever is on CHIMERA_HOME variable exists.

any doubt just ask

best regards

Laura

On 13/6/19 13:10, Wood, Katie wrote:
>
> Hello,
>
> I’m having some problems using the eman2 programs in scipion. I put in 
> all the variables the easy refine program asks me for but I end up 
> with the following error whenever I try to execute the program:
>
> /Missing Variables: /
>
> /EMAN2DIR: /home/u1666362/software/scipion/software/em/eman-2.12/
>
> //
>
> I get the same error when trying to run a different eman2 program, but 
> it doesn't happen for relion or xmipp, so I’m assuming I need to alter 
> something eman2 related. I was wondering if anyone knew how to fix 
> this? I couldn't find any answers on the mailing list so far.
>
> Also when I try to use the chimera viewer for 3D volumes it says I 
> haven’t installed the chimera plugin, however, I have installed the 
> plugin so I don’t know what to do to fix this either. I do have 
> chimera installed though on my pc (not the plugin from scipion, so 
> have two chimeras essentially) which works and was there before I 
> installed scipion. Do I need to uninstall that?
>
> Thanks in advance!
>
> Best wishes,
>
> Katherine Wood
>
>
>
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