[scipion-users] eman2 and chimera issues

[Wood, K. <K.W...@wa...>]

Hello,

I’m having some problems using the eman2 programs in scipion. I put in all the variables the easy refine program asks me for but I end up with the following error whenever I try to execute the program:

Missing Variables:
EMAN2DIR: /home/u1666362/software/scipion/software/em/eman-2.12

I get the same error when trying to run a different eman2 program, but it doesn't happen for relion or xmipp, so I’m assuming I need to alter something eman2 related. I was wondering if anyone knew how to fix this? I couldn't find any answers on the mailing list so far.

Also when I try to use the chimera viewer for 3D volumes it says I haven’t installed the chimera plugin, however, I have installed the plugin so I don’t know what to do to fix this either. I do have chimera installed though on my pc (not the plugin from scipion, so have two chimeras essentially) which works and was there before I installed scipion. Do I need to uninstall that?

Thanks in advance!

Best wishes,

Katherine Wood