Re: [scipion-users] How to export files?

[Gregory S. <sha...@gm...>]

Hello Matt,

Thank you for your interest! At the moment there are two protocols (relion
- export ctf and relion - export particles) that can create a star file for
importing into Relion. You can find them by using Ctrl+F, it's true they
are not in export section at the moment (to be fixed).
If you also want to move the data files outside the project you will have
to fix the produced star file (awk can do it neatly).

The processed data is kept unless you overwrite/delete the project. Unless,
of course, if you plan to remove the old scipion projects as soon as the
session if finished.

Hope this helps,
Grigory

--------------------------------------------------------------------------------
Grigory Sharov, Ph.D.

MRC Laboratory of Molecular Biology,
Francis Crick Avenue,
Cambridge Biomedical Campus,
Cambridge CB2 0QH, UK.
tel. +44 (0) 1223 267542 <+44%201223%20267542>
e-mail: gs...@mr...


On Fri, May 24, 2019 at 4:24 PM Matt Harrington <ma...@ms...> wrote:

>
> We're evaluating Scipion for use by our facility, not necessarily for use
> by individual users.  I recently had a demo and was left with one
> question.  It's not clear how to export processed data to final
> destination.  We have a simple pipeline of Import -> MotionCor2 ->
> Ctffind.  It appears that processed files are left in the Scipion working
> directory.  I'm told that previously processed data will be deleted when a
> new user starts collecting and starts a new Scipion run.
>
> The "Protocols SPA" view has a section titled "Export", but it doesn't
> appear to list any plugins.
>
> Is my understanding correct?  How should we proceed?
>
> Matt
>
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