Re: [scipion-users] relion 3

[Jonathan R. <re...@gm...>]

Hello Jose Miguel,

We also have interest in using Relion3 from within Scipion.

We currently are trying to use Scipion at our EM facility to monitor data
as it is collected and typically use Motioncor2 to do the motion
correction.   Many users want to use Relion3 to do their single particle
reconstructions but because you are not able to import Motioncor2 fixed
micrographs into Relion3 they need to re-run motion correction from within
Relion3.  It would be ideal if we could give them motion corrected
micrographs that they could directly use in the image processing program of
their choice.    I was curious if Scipion will or does include access to
this different multi-core cpu motion correction program?   I don't see it
in the protocols after following the instructions you have posted in the
link above.

Thank you for your time-

Jonathan_Remis




On Thu, Feb 21, 2019 at 11:22 AM Jose Miguel de la Rosa Trevin <
del...@gm...> wrote:

> Hi Daniel,
>
> I have updated the protocols in Scipion for support for Relion3. It is
> beta right now,
> but it has been used here in Stockholm and also a bit in Madrid. We
> haven't announced
> yet because we will wait until the next Scipion release (2.0) for that.
>
> I wrote some instructions to use it from the current Scipion version
> (v1.2.1)
> https://github.com/delarosatrevin/scipion/wiki/Testing-Relion-3-in-Scipion
> <https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_delarosatrevin_scipion_wiki_Testing-2DRelion-2D3-2Din-2DScipion&d=DwMFaQ&c=yHlS04HhBraes5BQ9ueu5zKhE7rtNXt_d012z2PA6ws&r=D_rs7PhtmkmTUoH64Stdl6OPL5kCXmTvZbb7Ola-aIs&m=WyDyWBGr3WYFt_HcN3ca4g6lI0to6OT4OjaVHX03qM8&s=CRCn6MzQcPw3qmitElhcn8pmM9Kl0tOeUkMbYMZ3j1Y&e=>
>
> Please don't hesitate to contact me if you need some help to update the
> Scipion
> installation for Relion 3 support.
>
> Cheers,
> Jose Miguel
>
>
> On Thu, Feb 21, 2019 at 8:15 PM Daniel Larsson <dan...@ic...>
> wrote:
>
>> When can we expect to have Relion 3 in Scipion?
>>
>> Regards,
>> Daniel
>>
>>
>>
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