[scipion-users] xmipp movie extract 'ProgrammingError' recursive use of commas not allowed

[Matthews-Palmer, T. R. S. <t.m...@im...>]

Dear Scipion users,

I am getting the following error in Caligula v1.2, from the protocol xmipp3 extract movie particles:

Any ideas or help greatly appreciated.
All the best,

Teige

00086:   Traceback (most recent call last):
00087:     File "/beebylab/software/scipion/1.2/scipion/pyworkflow/protocol/executor.py", line 137, in run
00088:       self.step._run()  # not self.step.run() , to avoid race conditions
00089:     File "/beebylab/software/scipion/1.2/scipion/pyworkflow/protocol/protocol.py", line 233, in _run
00090:       resultFiles = self._runFunc()
00091:     File "/beebylab/software/scipion/1.2/scipion/pyworkflow/protocol/protocol.py", line 229, in _runFunc
00092:       return self._func(*self._args)
00093:     File "/beebylab/software/scipion/1.2/scipion/pyworkflow/em/protocol/protocol_movies.py", line 234, in processMovieStep
00094:       if self._filterMovie(movie):
00095:     File "/beebylab/software/scipion/1.2/scipion/pyworkflow/em/packages/xmipp3/protocol_extract_particles_movies.py", line 434, in _filterMovie
00096:       micrograph = micSet[movieId]
00097:     File "/beebylab/software/scipion/1.2/scipion/pyworkflow/object.py", line 1040, in __getitem__
00098:       return self._getMapper().selectById(itemId)
00099:     File "/beebylab/software/scipion/1.2/scipion/pyworkflow/object.py", line 1025, in _getMapper
00100:       self.load()
00101:     File "/beebylab/software/scipion/1.2/scipion/pyworkflow/object.py", line 1117, in load
00102:       self._idCount = self._mapper.maxId()
00103:     File "/beebylab/software/scipion/1.2/scipion/pyworkflow/mapper/sqlite.py", line 900, in maxId
00104:       return 0 if self.doCreateTables else self.db.maxId()
00105:     File "/beebylab/software/scipion/1.2/scipion/pyworkflow/mapper/sqlite.py", line 1201, in maxId
00106:       self.executeCommand(self.selectCmd('1').replace('*', 'MAX(id)'))
00107:   ProgrammingError: Recursive use of cursors not allowed.