Re: [scipion-users] importing micrographs.star

[Jose M. de la R. T. <del...@gm...>]

Yes, but we need to double check. We had an issue here importing
coordinates from Warp.
It seems that for some particles it wrote the FOM value in the star files
and for others not. This caused a
fail in the import protocol. We did a quick and dirty workaround, but not a
general solution.

On Tue, Aug 7, 2018 at 9:15 AM Juha Huiskonen <ju...@st...> wrote:

> Hi Jose Miguel,
>
> Importing particles should work already, as Warp writes a Relion style
> STAR file for particles with CTF info.  Just the option for importing
> micrographs using a STAR file is missing.
>
> Best wishes,
> Juha
>
> On Tue, Aug 7, 2018 at 10:12 AM Jose Miguel de la Rosa Trevin <
> del...@gm...> wrote:
>
>> Yes, that is a good idea to add the import of particles (and maybe
>> micrographs/ctf) from Warp.
>>
>> Best,
>> Jose Miguel
>>
>> On Tue, Aug 7, 2018 at 9:08 AM Juha Huiskonen <ju...@st...>
>> wrote:
>>
>>> Hi Pablo,
>>>
>>> It looks like a normal Relion micrographs star file.  Here's an idea: I
>>> could run particle extraction, then stop it, replace input_particles.star
>>> with my file, and then continue the run.  Do you think this would work? (
>>> It's not so simple to to turn it into CTF files. )
>>>
>>> Can you please add this import option in the wish list, thanks.
>>>
>>> Best wishes,
>>> Juha
>>>
>>>
>>> On Tue, Aug 7, 2018 at 10:02 AM Pablo Conesa <pc...@cn...>
>>> wrote:
>>>
>>>> How does the star file look like?
>>>>
>>>> it might be possible to turn it into a ctf import file?
>>>>
>>>> I know this is a hack but can't see something better..
>>>>
>>>> Juha, do you mind to send us the star file to have a look at it.
>>>>
>>>> On 05/08/18 15:26, Juha Huiskonen wrote:
>>>>
>>>> Hi All,
>>>>
>>>> I have a STAR file with micrograph metadata, including CTF parameters
>>>> (produced in Warp).   It seems that currently a STAR file input is
>>>> available only for particles and not for micrographs.  Is there any
>>>> workaround to import the micrographs at the moment, with their CTF info?
>>>>
>>>> Best wishes,
>>>> Juha
>>>>
>>>>
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