Re: [scipion-users] importing micrographs.star

[Juha H. <ju...@st...>]

Hi Jose Miguel,

Importing particles should work already, as Warp writes a Relion style STAR
file for particles with CTF info.  Just the option for importing
micrographs using a STAR file is missing.

Best wishes,
Juha

On Tue, Aug 7, 2018 at 10:12 AM Jose Miguel de la Rosa Trevin <
del...@gm...> wrote:

> Yes, that is a good idea to add the import of particles (and maybe
> micrographs/ctf) from Warp.
>
> Best,
> Jose Miguel
>
> On Tue, Aug 7, 2018 at 9:08 AM Juha Huiskonen <ju...@st...>
> wrote:
>
>> Hi Pablo,
>>
>> It looks like a normal Relion micrographs star file.  Here's an idea: I
>> could run particle extraction, then stop it, replace input_particles.star
>> with my file, and then continue the run.  Do you think this would work? (
>> It's not so simple to to turn it into CTF files. )
>>
>> Can you please add this import option in the wish list, thanks.
>>
>> Best wishes,
>> Juha
>>
>>
>> On Tue, Aug 7, 2018 at 10:02 AM Pablo Conesa <pc...@cn...> wrote:
>>
>>> How does the star file look like?
>>>
>>> it might be possible to turn it into a ctf import file?
>>>
>>> I know this is a hack but can't see something better..
>>>
>>> Juha, do you mind to send us the star file to have a look at it.
>>>
>>> On 05/08/18 15:26, Juha Huiskonen wrote:
>>>
>>> Hi All,
>>>
>>> I have a STAR file with micrograph metadata, including CTF parameters
>>> (produced in Warp).   It seems that currently a STAR file input is
>>> available only for particles and not for micrographs.  Is there any
>>> workaround to import the micrographs at the moment, with their CTF info?
>>>
>>> Best wishes,
>>> Juha
>>>
>>>
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