Re: [scipion-users] Fwd: Re: Invitation to speak at the 2019 Interdisciplinary Workshop on single-particle cryo-EM at Rutgers University

[Pablo C. <pc...@cn...>]

Dear all! Don't know much about this error. It catch my attention the 
Warning about running mpi as root!!! First time I see it, although it 
seems to me that is just a warning.


Best thing to do is to post this at sci...@li...


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On 02/07/18 09:37, Carlos Oscar Sorzano wrote:
>
> Dear Arek,
>
>
> I have not seen this error before, and actually in the log there is no 
> obvious error. There is a severe warning against running mpi as root 
> (is it possible that you are running Scipion as root?), but in itself 
> that should not stop the program. I would try running as a different user.
>
>
> Cheers, Carlos Oscar
>
>
>
> -------- Forwarded Message --------
> Subject: 	Re: Invitation to speak at the 2019 Interdisciplinary 
> Workshop on single-particle cryo-EM at Rutgers University
> Date: 	Fri, 29 Jun 2018 17:13:33 +0000
> From: 	Arkadiusz Kulczyk <are...@ru...>
> To: 	Carlos Oscar Sorzano <co...@cn...>
>
>
>
> Hi Carlos,
>
> These are great news!  I'm in the process of putting the program 
> together, so I will follow up with more details shortly.
>
> If you don't mind I'll use this opportunity to ask the following:  I'm 
> having issues with: relion -3D auto-refine while running it from 
> Scipion.  Wouldn't you mind to have a quick look at the attachment 
> (run.stdout) and let me know what I'm doing wrong?  Many thanks!
>
> I look forward to welcoming you at Rutgers.
>
>
> Best,
>
> Arek
>
> ------------------------------------------------------------------------
> *From:* Carlos Oscar Sorzano <co...@cn...>
> *Sent:* Friday, June 29, 2018 12:31:11 PM
> *To:* Arkadiusz Kulczyk
> *Subject:* Re: Invitation to speak at the 2019 Interdisciplinary 
> Workshop on single-particle cryo-EM at Rutgers University
>
> Dear Arek,
>
>
> good to know from you. It will be a pleasure to attend the Workshop. 
> Is there any particular topic you would be interested and that I could 
> explain? If not, we are currently working on several topics like 
> sharpening and volume correction, stream processing, directional 
> resolution, or continuous heterogeneity.
>
>
> Cheers, Carlos Oscar
>
>
> On 06/26/18 20:02, Arkadiusz Kulczyk wrote:
>>
>> Dear Carlos,
>>
>>
>> It is with great pleasure that I invite you to be our guest 
>> speaker at the 6th Interdisciplinary Quantitative Biology Workshop on 
>> single-particle cryo-EM, which will be held on January 8-12, 2019 at 
>> Rutgers University.  Your presence would be greatly appreciated and 
>> would provide an inspiration to our young, but rapidly growing 
>> cryo-EM community at Rutgers.
>>
>>
>> Our facility located in the Institute for Quantitative Biomedicine 
>> (IQB) was established in 2016, a year prior I joined Rutgers, and it 
>> houses 200 kV Talos Arctica equipped with a Volta phase plate, an 
>> energy filter and a K2 direct detector.  The IQB is also the 
>> headquarters of the PDB.  I expect that 50-60 participants from 
>> academia and industry will join the workshop.  The plan will include 
>> morning presentations from invited speakers and practical sessions on 
>> data collection and image processing in the afternoons.  In January 
>> 2018, we organized a successful workshop on cryo-ET: 
>> (https://iqb.rutgers.edu/node/90). We would be very honored if you 
>> decide to participate in the workshop.
>>
>>
>> With best wishes,
>>
>> Arek
>>
>> __________________________
>> *Arek Kulczyk, M.Sc., Ph.D.*
>>
>> Assistant Professor in Biochemistry & Microbiology
>>
>> & Full Member of Cancer Institute of New Jersey
>>
>> Institute for Quantitative Biomedicine, Room 208H
>>
>> Rutgers University
>>
>> 174 Frelinghuysen Road, Piscataway, NJ 08854, USA
>>
>> +1 (848) 445-4553 / kulczyk-lab.cryoemcorp.com
>>
>
> -- 
> ------------------------------------------------------------------------
> Carlos Oscar Sánchez Sorzano                  e-mail:co...@cn... <mailto:co...@cn...>
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