Re: [scipion-users] Problems with scipion installation

[Gregory S. <sha...@gm...>]

Hello Bruno,

I might be wrong, but a wild guess:do you have anything sourced like eman2
which might setting its own PYTHONPATH?
 Did you try to change first line in the main ./scipion file to point it to
the python provided with scipion? (software/bin/python)


On Tue, Jun 26, 2018, 20:01 Bruno Matsuyama <bru...@gm...>
wrote:

> I searched on the internet and tried some things, but still not work. What
> I found is differences between how the modules are called in the script,
> but I am not sure if I am worsening the situation, because I dont have much
> experience with ubuntu os.
>
> Best Regards,
>
> Bruno
>
> On Tue, 26 Jun 2018 at 14:56, Patrick Goetz <pg...@ma...>
> wrote:
>
>> The default python on Ubuntu 18.04 seems to still be 2.7:
>>
>> cnsit@rossmann:/usr/bin$ cat /etc/lsb-release
>> DISTRIB_ID=Ubuntu
>> DISTRIB_RELEASE=18.04
>> DISTRIB_CODENAME=bionic
>> DISTRIB_DESCRIPTION="Ubuntu 18.04 LTS"
>> cnsit@rossmann:/usr/bin$ ls -l python
>> lrwxrwxrwx 1 root root 9 May  8 12:15 python -> python2.7
>>
>>
>> On 06/25/2018 05:44 PM, Jose Miguel de la Rosa Trevin wrote:
>> > Hi Bruno,
>> >
>> > Maybe Ubuntu 18 comes with Python 3 by default? Although we have tested
>> > the install with it.
>> > Did you search about this error in Ubuntu? Just in case could give us
>> > some hint.
>> >
>> > Best,
>> > Jose Miguel
>> >
>> >
>> > On Mon, Jun 25, 2018 at 10:04 PM Bruno Matsuyama
>> > <bru...@gm... <mailto:bru...@gm...>> wrote:
>> >
>> >     Hello,
>> >
>> >     I'm having some trouble to install scipion  and I hope that somebody
>> >     here can help me. I'm using Ubuntu 18.04, and after installing the
>> >     dependencies, when I tried to generate the configuration files, I
>> >     get the following message:
>> >
>> >       ./scipion config
>> >
>> >     Traceback (most recent call last):
>> >        File "./scipion", line 34, in <module>
>> >          import subprocess
>> >        File "/usr/lib/python2.7/subprocess.py", line 72, in <module>
>> >          import select
>> >     ImportError: No module named select
>> >
>> >     Did someone had the same error or know how to fix it ?
>> >
>> >     Best Regards,
>> >
>> >     Bruno
>> >
>> >
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