From: Patrick G. <pg...@ma...> - 2018-04-25 16:37:35
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Hi - Sorry for continuously spamming the list, but the Spider MDA Workflow test isn't working again, I just want to make sure I haven't introduced structural installation problems. First, I re-installed Scipion in /opt so that the users can access it, and made sure to install the spider package. Now running scipion as an ordinary user: /opt/scipion/scipion tests em.workflows.test_workflow_spiderMDA I get error messages and "2 Tests failed" again. Snooping around in the locally created ScipionUserData folder, I found this note in ~/ScipionUserData/projects/TestSpiderWorkflow/Runs/000002_ProtImportParticles/logs/run.stdout: ------- Traceback (most recent call last): File "/opt/scipion/pyworkflow/protocol/protocol.py", line 186, in run self._run() File "/opt/scipion/pyworkflow/protocol/protocol.py", line 1104, in _run 'Protocol.run: Validation errors:\n' + '\n'.join(errors)) Exception: Protocol.run: Validation errors: There are no files matching the pattern /opt/scipion/data/tests/hemoglobin_mda/particles/*.spi ------- So apparently the test is trying to install data to /opt/scipion/data rather than ~/ScipionUserData ? Am I missing a configuration step that would instruct the system to process all data in the user's ScipionUserData folder? |