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Re: [scipion-users] config looking for mpi.h in wrong location on Ubuntu?
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From: Pablo C. <pc...@cn...> - 2018-04-19 05:50:07
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Hi Patrick, We have default values for the paths of several dependencies, like MPI or JAVA. Our current default values do not match Ubuntu paths. At this point you can: 1.- run: ./scipion config --overwrite This tries to guess those paths, and in Ubuntu 14 --> 16 works fine. Sorry never tried on ubuntu 18! 2.- Manually, edit the config file: this file can be found at <SCIPION_HOME>/config/scipion.conf Regarding the libreadline6,....could this be a change related to ubuntu 18? To me, it seems that libreadline6 hasn't made it to bionic, yet?: <https://packages.ubuntu.com/trusty/libreadline6,%20yet> Whereas, the dev version has made it! <https://packages.ubuntu.com/trusty/libreadline6-dev> I have added a note in our wiki!! Thanks for the feedback! Patrick, probably you are the first one to install Scipion in Ubuntu 18. Please let us know how it goes, whether if it goes right and more importantly if something does wrong. All the best, Pablo. On 18/04/18 19:40, Patrick Goetz wrote: > Hi - > > I'm trying to configure Scipion cloned from the git repo on an Ubuntu > 18.04 machine and get the following error message: > > ----------------- > Checking paths in /root/scipion/config/scipion.conf ... > Path to MPI_LIBDIR (/usr/lib64/mpi/gcc/openmpi/lib) should exist but > it doesn't. > Path to MPI_INCLUDE (/usr/lib64/mpi/gcc/openmpi/include) should > exist but it doesn't. > Cannot find file: /usr/lib64/mpi/gcc/openmpi/include/mpi.h > Errors found. > ----------------- > > I think it's looking for the MPI header file in the wrong location for > Ubuntu? It's here: > > /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h > > > Also, minor point. The installation instructions have a list of > dependencies that need to be installed which includes "libreadline6". > There's no installation candidate for this, I think it needs to be > lib64readline6-dev instead. > > ------------------------------------------------------------------------------ > > Check out the vibrant tech community on one of the world's most > engaging tech sites, Slashdot.org! http://sdm.link/slashdot > _______________________________________________ > scipion-users mailing list > sci...@li... > https://lists.sourceforge.net/lists/listinfo/scipion-users |
